PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00020027-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 480aa MW: 53727.8 Da PI: 6.1477

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00020027-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	362.1	2e-111	271	473	7	217
VOZ 7 lgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdls 99 gpkcalwdc+ paqg++w+qd+cs fh tla neg+p ++pvlrp+gidlkdg+lfaal +gipecegaatakspwna elfd+ PSME_00020027-RA 271 TGPKCALWDCSTPAQGTKWCQDHCSDFHMTLASNEGAPRMRPVLRPGGIDLKDGPLFAAL--------IGIPECEGAATAKSPWNAYELFDMY 355 69*******************************************************9........7******************** PP VOZ 100 llegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvde 192 +lege++rewlffdkprrafesgnrkq sl dysgrgwhesrkqv k+fgglkrsyymdpqps++fewhlyeyein++da+alyrlelk+v + PSME_00020027-RA 356 VLEGESMREWLFFDKPRRAFESGNRKQCSLRDYSGRGWHESRKQVTKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACALYRLELKMVCS 448 ***************************************************************************************** PP VOZ 193 kksakgkvskdsladlqkklgrlta 217 kk++kgkv d+l+dlq++lg+l+a PSME_00020027-RA 449 KKNTKGKVGGDPLVDLQHQLGKLSA 473 *********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.70.330	1.6E-10	86	144	IPR012677	Nucleotide-binding alpha-beta plait domain
Pfam	PF08777	2.3E-5	87	144	IPR014886	La protein, RNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000166	Molecular Function	nucleotide binding
GO:0003723	Molecular Function	RNA binding

Sequence ? help Back to Top
Protein Sequence Length: 480 aa Download sequence Send to blast
GALQHTAGQS SAYSSSFLLR RVQTDSSRGF FLTIRSQEEE GEQYQIGRVF KSFREMAGEK 60 PKKSNVWNTV KPFVNGGASG MLTTCVIQPV DMIKYVDYHM GAESGYVRFE QPEMVQKPRA 120 AAVLAEEGGL VVKNYIAVLE AVEGMCTFFC GCVVKLGRNT GLSSVKVKIS VGNLQATDFL 180 VDDFHTLEKD FERVSRCTNI GEGLHQNSYP QTSVQLPANI EHQENNNYVQ TSEQLPPNLV 240 EGLEVTSGLE GGQINFHQDY IPAAQPIFTL TGPKCALWDC STPAQGTKWC QDHCSDFHMT 300 LASNEGAPRM RPVLRPGGID LKDGPLFAAL IGIPECEGAA TAKSPWNAYE LFDMYVLEGE 360 SMREWLFFDK PRRAFESGNR KQCSLRDYSG RGWHESRKQV TKDFGGLKRS YYMDPQPSTQ 420 FEWHLYEYEI NDCDACALYR LELKMVCSKK NTKGKVGGDP LVDLQHQLGK LSADFSWVEK

Sequence ? help Back to Top

Protein Sequence Length: 480 aa Download sequence Send to blast

GALQHTAGQS SAYSSSFLLR RVQTDSSRGF FLTIRSQEEE GEQYQIGRVF KSFREMAGEK  60
PKKSNVWNTV KPFVNGGASG MLTTCVIQPV DMIKYVDYHM GAESGYVRFE QPEMVQKPRA  120
AAVLAEEGGL VVKNYIAVLE AVEGMCTFFC GCVVKLGRNT GLSSVKVKIS VGNLQATDFL  180
VDDFHTLEKD FERVSRCTNI GEGLHQNSYP QTSVQLPANI EHQENNNYVQ TSEQLPPNLV  240
EGLEVTSGLE GGQINFHQDY IPAAQPIFTL TGPKCALWDC STPAQGTKWC QDHCSDFHMT  300
LASNEGAPRM RPVLRPGGID LKDGPLFAAL IGIPECEGAA TAKSPWNAYE LFDMYVLEGE  360
SMREWLFFDK PRRAFESGNR KQCSLRDYSG RGWHESRKQV TKDFGGLKRS YYMDPQPSTQ  420
FEWHLYEYEI NDCDACALYR LELKMVCSKK NTKGKVGGDP LVDLQHQLGK LSADFSWVEK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT118531	6e-73	BT118531.1 Picea glauca clone GQ04007_G03 mRNA sequence.
GenBank	EF677286	6e-73	EF677286.1 Picea sitchensis clone WS02764_M18 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011626288.1	1e-116	transcription factor VOZ1
Refseq	XP_011626289.1	1e-116	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-108	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	W1Q0P1	1e-115	W1Q0P1_AMBTC; Uncharacterized protein
STRING	ERN14021	1e-116	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-110	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]