PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020028-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 221aa    MW: 24928 Da    PI: 8.7748
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020028-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.43e-17552148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT+eEd +l+ +++ +G g+W ++++  g+ R++k+c++rw++yl
  PSME_00020028-RA  5 KGAWTKEEDHRLIAYIRNHGEGSWCSVPKAAGLLRCGKSCRLRWNNYL 52
                      79******************************99*************7 PP
2Myb_DNA-binding50.93.6e-1659102247
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       g+++++Ed+l+++++   G++ W+ Iar+++ gRt+++++++w+++
  PSME_00020028-RA  59 GNFSEQEDDLIIQLHSIVGNR-WSIIARRLQ-GRTDNEIRNHWNSH 102
                       89*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.506152IPR017930Myb domain
SuperFamilySSF466897.75E-29299IPR009057Homeodomain-like
SMARTSM007171.1E-12454IPR001005SANT/Myb domain
PfamPF002496.9E-16552IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-22659IPR009057Homeodomain-like
CDDcd001679.73E-11752No hitNo description
PROSITE profilePS5129427.35953107IPR017930Myb domain
SMARTSM007172.9E-1557105IPR001005SANT/Myb domain
PfamPF002499.2E-1559102IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-2560108IPR009057Homeodomain-like
CDDcd001676.36E-1260103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MGNNKGAWTK EEDHRLIAYI RNHGEGSWCS VPKAAGLLRC GKSCRLRWNN YLRPDLRHGN  60
FSEQEDDLII QLHSIVGNRW SIIARRLQGR TDNEIRNHWN SHIKKKLVKR GLDPQTHRPL  120
CSRQNSNTVR SSQPAPKCQL IPEFESSGTP YIVDFFQQDR LARSSPVPPG SSDSEDHPDL  180
NLDLCISLPC NSSNASNRVT SGLHRIVDLN SNSVSGVCID I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-2951077108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in regulation of protection against UV. Mediates transcriptional repression of CYP73A5, the gene encoding trans-cinnamate 4-monooxygenase, thereby regulating the accumulation of the UV-protectant compound sinapoylmalate. {ECO:0000269|PubMed:11080161}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by exposure to UV-B light. {ECO:0000269|PubMed:11080161}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006826645.12e-70myb-related protein 308
SwissprotQ9SZP12e-67MYB4_ARATH; Transcription repressor MYB4
TrEMBLA9NYS69e-90A9NYS6_PICSI; Uncharacterized protein
TrEMBLC0JTD65e-90C0JTD6_PICGL; R2R3-MYB transcription factor MYB17
STRINGERM938828e-70(Amborella trichopoda)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.11e-69myb domain protein 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Schenke D,Cai D,Scheel D
    Suppression of UV-B stress responses by flg22 is regulated at the chromatin level via histone modification.
    Plant Cell Environ., 2014. 37(7): p. 1716-21
    [PMID:24450952]
  3. Zhou M, et al.
    Changing a conserved amino acid in R2R3-MYB transcription repressors results in cytoplasmic accumulation and abolishes their repressive activity in Arabidopsis.
    Plant J., 2015. 84(2): p. 395-403
    [PMID:26332741]
  4. Zhang J, et al.
    Soybean SPX1 is an important component of the response to phosphate deficiency for phosphorus homeostasis.
    Plant Sci., 2016. 248: p. 82-91
    [PMID:27181950]
  5. Zhou M, et al.
    LNK1 and LNK2 Corepressors Interact with the MYB3 Transcription Factor in Phenylpropanoid Biosynthesis.
    Plant Physiol., 2017. 174(3): p. 1348-1358
    [PMID:28483877]
  6. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]
  7. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]