PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00020065-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 735aa MW: 81045.7 Da PI: 7.1671

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00020065-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	51.8	1.5e-16	516	562	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L++l+P++ K +Ka++L +A+eY+k+Lq PSME_00020065-RA 516 VHNLSERRRRDRINERMRALQKLIPNS-----SKTDKASMLDEAIEYLKHLQ 562 6***********************8.....7****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.36E-20	509	574	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	18.584	512	561	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.7E-19	512	572	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.0E-14	516	562	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.67E-11	517	566	No hit	No description
SMART	SM00353	2.8E-19	518	567	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 735 aa Download sequence Send to blast
WCWISDNSLN HNPIYFILIT SGISSFIFCG VAAKKCFFWT PSQLPCENYR NPVCRRWTCG 60 SHGLIRPRWY PANCVRDLTA YTKCVPAAWD AACSTETEPS SLGPFNMFSF NKSKAWDQED 120 QRTELEDQFP PAMPDYEQLA ELIWKDGHPA MQDLGSKANR HHNNHKISSS GYWGNDHPAA 180 INRRQSQGSE KEVEGTLDAI VENLPPIDEE TASWFNCTLN ELQEPTLGHR KPEKISNSAS 240 EPNDPDALVP DSNAIARPEY AFSHSIPMKS ELSEPPMSSS PSPVHGQPHP QLQSSKDGGS 300 MNFSHFSKPA VIRKAQLHTI GSASGPTNSQ RVRQHNNGVE LPGSNNMPAS IVESSGGICA 360 NSDESYPSSC RASTLSSKNQ PPLLNMVRVY PKPIPTSETN ASDHDCITAK AIDDQSRGNN 420 NSMSESATIA KERTTSENYE GVEVTLTSTS GGSPNNSMTH KSGKEPCSKR WKRKFSGEED 480 SGCQSEDPDD NESAQAKKPQ TGRRSGSSNR SRAAAVHNLS ERRRRDRINE RMRALQKLIP 540 NSSKTDKASM LDEAIEYLKH LQAQLQMMIL RNGMNMPPMM MPLGMQQLQM SLLASLGPTG 600 LGMGMTGVGL GMGMGIMDMN SVAAGRVPMA PMAQPVPTIG SHAVPGSIHP ATFIQPNMTA 660 TGFSTSPDTN DRMGNTSFLD LYRAYIACQR QSMNMNMNMD FYNSMALQQQ QQQQVKQLQQ 720 QQLAQHQQQQ ANNTK

Sequence ? help Back to Top

Protein Sequence Length: 735 aa Download sequence Send to blast

WCWISDNSLN HNPIYFILIT SGISSFIFCG VAAKKCFFWT PSQLPCENYR NPVCRRWTCG  60
SHGLIRPRWY PANCVRDLTA YTKCVPAAWD AACSTETEPS SLGPFNMFSF NKSKAWDQED  120
QRTELEDQFP PAMPDYEQLA ELIWKDGHPA MQDLGSKANR HHNNHKISSS GYWGNDHPAA  180
INRRQSQGSE KEVEGTLDAI VENLPPIDEE TASWFNCTLN ELQEPTLGHR KPEKISNSAS  240
EPNDPDALVP DSNAIARPEY AFSHSIPMKS ELSEPPMSSS PSPVHGQPHP QLQSSKDGGS  300
MNFSHFSKPA VIRKAQLHTI GSASGPTNSQ RVRQHNNGVE LPGSNNMPAS IVESSGGICA  360
NSDESYPSSC RASTLSSKNQ PPLLNMVRVY PKPIPTSETN ASDHDCITAK AIDDQSRGNN  420
NSMSESATIA KERTTSENYE GVEVTLTSTS GGSPNNSMTH KSGKEPCSKR WKRKFSGEED  480
SGCQSEDPDD NESAQAKKPQ TGRRSGSSNR SRAAAVHNLS ERRRRDRINE RMRALQKLIP  540
NSSKTDKASM LDEAIEYLKH LQAQLQMMIL RNGMNMPPMM MPLGMQQLQM SLLASLGPTG  600
LGMGMTGVGL GMGMGIMDMN SVAAGRVPMA PMAQPVPTIG SHAVPGSIHP ATFIQPNMTA  660
TGFSTSPDTN DRMGNTSFLD LYRAYIACQR QSMNMNMNMD FYNSMALQQQ QQQQVKQLQQ  720
QQLAQHQQQQ ANNTK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	520	525	ERRRRD

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT123202	0.0	BT123202.1 Picea sitchensis clone WS04710_B07 unknown mRNA.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	2e-15	phytochrome interacting factor 3