PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020237-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 357aa    MW: 38190.2 Da    PI: 9.8246
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020237-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.77.5e-12181226555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h+++Er+RR+ri +++  L+el+P +      K +Ka++L + ++Y+k Lq
  PSME_00020237-RA 181 HSIAERQRRERIAERMKALQELVPIC-----NKTDKAAMLDEIIDYVKFLQ 226
                       99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-17175235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.326176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.4E-17179235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.58E-13180230No hitNo description
PfamPF000102.9E-9181226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-14182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MLSISGFQAS TQTRIYWDLV RAQDPWHYSW AQQGDASHSQ LLAGTGGPGL LAVIRAVIRS  60
PLSGSAVAAA AADTITIQSP TQSWRPPYVG LNPLSLGQGR VDTARLLGKR LRDDQARPTN  120
TGLFTNFGVA VGSNNEQAGQ QSTYELALAQ PQPQSLSPPG AVAAPARPRA RARHGQATDP  180
HSIAERQRRE RIAERMKALQ ELVPICNKTD KAAMLDEIID YVKFLQLQVK VLSMSRLGGA  240
GAGGPLVADI SADASNSMRL SRIKKGHENI CRDDDGLSIT EEEVAKLMDE NMGSAMQYLQ  300
TKGLCLIPPS IATTISGRST MQCNALVRSP SPCASNRVIN STHAASQSKS RSKEGTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185190RQRRER
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325140.23e-66transcription factor bHLH66
TrEMBLA0A3S3QVD63e-66A0A3S3QVD6_9MAGN; Transcription factor bHLH66
STRINGPOPTR_0018s11800.11e-65(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-43LJRHL1-like 1