PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020284-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 208aa    MW: 22797.9 Da    PI: 5.0209
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020284-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26086.14.8e-2793188499
            DUF260   4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                       +Ck+ +++C ++C++   f++++ +kfa +h++FGa nv+kl+++lp +++ da++s+v eA ar++dPv G++g+i++lq q + l+ ++++
  PSME_00020284-RA  93 VCKMEQKECLDNCTMLYRFASNDLHKFASLHRVFGACNVIKLIQDLPSDQKADAINSMVCEAGARLQDPVLGCAGIIQQLQLQTSDLELQISA 185
                       7**************************************************************************************999998 PP

            DUF260  97 lke 99 
                       ++e
  PSME_00020284-RA 186 TEE 188
                       876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089118.29689190IPR004883Lateral organ boundaries, LOB
PfamPF031951.6E-2693186IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MDLKQISVFL EVWLGAASAT LLNQGRSVWV HLPGTDGLLS SLERLRLEDA GVADPIPLNG  60
NCRSALSSRS DDMMSNANEK PGTQSPSADF HDVCKMEQKE CLDNCTMLYR FASNDLHKFA  120
SLHRVFGACN VIKLIQDLPS DQKADAINSM VCEAGARLQD PVLGCAGIIQ QLQLQTSDLE  180
LQISATEETI QKMRSQHAQL VASTRIQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-23771852106LOB family transfactor Ramosa2.1
5ly0_B2e-23771852106LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004960340.11e-33LOB domain-containing protein 1
TrEMBLA9P1U37e-52A9P1U3_PICSI; Uncharacterized protein
STRINGSi024430m6e-33(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.14e-32LOB domain-containing protein 11