PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020285-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 168aa    MW: 18583 Da    PI: 4.3425
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020285-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26085.85.9e-2724118498
            DUF260   4 aCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 
                        Ck+ +++C ++C++   +++++ +kf ++h++FGa nv+kl+++lp ++  da++s+vyeA ar++dP  G++g+i++lq q++ l++++ +
  PSME_00020285-RA  24 QCKMEQKECLDNCTMLYRLASNDLHKFSILHQVFGACNVIKLIQDLPSDHGVDAINSMVYEASARLQDPALGCTGIIQQLQLQISDLQSQITA 116
                       6****************************************************************************************9988 PP

            DUF260  97 lk 98 
                       ++
  PSME_00020285-RA 117 TQ 118
                       76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089117.19120121IPR004883Lateral organ boundaries, LOB
PfamPF031955.5E-2624118IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 168 aa     Download sequence    Send to blast
MQIMMRNATE KPCTQSPAAA FHEQCKMEQK ECLDNCTMLY RLASNDLHKF SILHQVFGAC  60
NVIKLIQDLP SDHGVDAINS MVYEASARLQ DPALGCTGII QQLQLQISDL QSQITATQAI  120
VQKMHSQEAE ILASCPGIRI AFNPATSTSI NDDDDDSHED LFDSNLLD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-2281182108LOB family transfactor Ramosa2.1
5ly0_B6e-2281182108LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0876171e-101EF087617.1 Picea sitchensis clone WS02730_N15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P1U33e-65A9P1U3_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.12e-23LOB domain-containing protein 11