PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020323-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 175aa    MW: 19950.7 Da    PI: 5.9217
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020323-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.47.9e-41171161100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +Ca+Ck++r+kC+++Cvlapyfp+++pkkf  vh++FG+ +v+kll++lp e+r+da++s+vyeA+ r +dPv+G+vgvi++lq+++++l+ +
  PSME_00020323-RA  17 PCAGCKIQRKKCSEKCVLAPYFPQDNPKKFLLVHRVFGNGHVVKLLQDLPAEQRSDAVNSMVYEANQRFHDPVHGCVGVIKDLQKKVAELELQ 109
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++++e
  PSME_00020323-RA 110 LASTQAE 116
                       **99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.5216117IPR004883Lateral organ boundaries, LOB
PfamPF031951.3E-3917114IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MQNMISENAW RTETVSPCAG CKIQRKKCSE KCVLAPYFPQ DNPKKFLLVH RVFGNGHVVK  60
LLQDLPAEQR SDAVNSMVYE ANQRFHDPVH GCVGVIKDLQ KKVAELELQL ASTQAELTNI  120
SMQHANLFTL VTGYQEASDP NFYCLSPQES DVTDVKPLVF DDQDHPLQFW ESLWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-331611710111LOB family transfactor Ramosa2.1
5ly0_B2e-331611710111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015057811.11e-50LOB domain-containing protein 1
SwissprotQ9LQR01e-47LBD1_ARATH; LOB domain-containing protein 1
SwissprotQ9SK085e-47LBD11_ARATH; LOB domain-containing protein 11
TrEMBLB8LQI93e-74B8LQI9_PICSI; Uncharacterized protein
STRINGSolyc11g072470.1.18e-50(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-50LOB domain-containing protein 1