PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00020585-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 428aa MW: 48044.6 Da PI: 6.5831

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00020585-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	379.8	7.8e-117	215	425	1	217
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp+aflgpkcalwdc rpaqg++w+qdycs fh tla neg+pg++ vl p+gidlkdg+lfaalsak+q k vgipeceg atakspwna PSME_00020585-RA 215 PPPAAFLGPKCALWDCLRPAQGTKWCQDYCSDFHMTLASNEGAPGMRHVLCPGGIDLKDGPLFAALSAKTQEKAVGIPECEGVATAKSPWNAY 307 89***************************************************************************************** PP VOZ 94 elfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrle 186 elfd+ +lege++rewlffdk sgnrkqrslpdysgrgwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+alyr+e PSME_00020585-RA 308 ELFDMYVLEGESMREWLFFDK------SGNRKQRSLPDYSGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDFDACALYRIE 394 ****************8......9************************************************************* PP VOZ 187 lklvdekksakgkvskdsladlqkklgrlta 217 lk+v +kk++kgkv d+l+dlq++lg+l+a PSME_00020585-RA 395 LKMVRSKKNTKGKVGGDPLVDLQHQLGKLSA 425 ***************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 428 aa Download sequence Send to blast
MMMGSGRRYF HGLTRSDVPI SKVPFSVVPV FATGSHFPTF GSVPMGYETE SFTGTGSLSG 60 SLYIDRRRIE VLKSPIFMLT IIWEQSQDMS VLSSLKWFRN HEQQLYLRKR GGLVVKNYIV 120 VLEAVEGEGL HQKSYPQTSV QLPANIEHQE NNNYVQTSKQ LPPNLVEGLE VTSGLEAGQI 180 NFHQDYIPAA QPIFTLTGEE ETSPVFNGPQ PGLCPPPAAF LGPKCALWDC LRPAQGTKWC 240 QDYCSDFHMT LASNEGAPGM RHVLCPGGID LKDGPLFAAL SAKTQEKAVG IPECEGVATA 300 KSPWNAYELF DMYVLEGESM REWLFFDKSG NRKQRSLPDY SGRGWHESRK QVIKDFGGLK 360 RSYYMDPQPS TQFEWHLYEY EINDFDACAL YRIELKMVRS KKNTKGKVGG DPLVDLQHQL 420 GKLSAEFS

Sequence ? help Back to Top

Protein Sequence Length: 428 aa Download sequence Send to blast

MMMGSGRRYF HGLTRSDVPI SKVPFSVVPV FATGSHFPTF GSVPMGYETE SFTGTGSLSG  60
SLYIDRRRIE VLKSPIFMLT IIWEQSQDMS VLSSLKWFRN HEQQLYLRKR GGLVVKNYIV  120
VLEAVEGEGL HQKSYPQTSV QLPANIEHQE NNNYVQTSKQ LPPNLVEGLE VTSGLEAGQI  180
NFHQDYIPAA QPIFTLTGEE ETSPVFNGPQ PGLCPPPAAF LGPKCALWDC LRPAQGTKWC  240
QDYCSDFHMT LASNEGAPGM RHVLCPGGID LKDGPLFAAL SAKTQEKAVG IPECEGVATA  300
KSPWNAYELF DMYVLEGESM REWLFFDKSG NRKQRSLPDY SGRGWHESRK QVIKDFGGLK  360
RSYYMDPQPS TQFEWHLYEY EINDFDACAL YRIELKMVRS KKNTKGKVGG DPLVDLQHQL  420
GKLSAEFS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT115389	2e-44	BT115389.1 Picea glauca clone GQ03615_G11 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010260370.1	1e-125	PREDICTED: transcription factor VOZ1
Swissprot	Q9SGQ0	1e-113	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A1U8A0G4	1e-124	A0A1U8A0G4_NELNU; transcription factor VOZ1
STRING	XP_010260370.1	1e-125	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-116	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]