PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020824-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family NAC
Protein Properties Length: 253aa    MW: 29174.3 Da    PI: 8.9562
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020824-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.51.9e-47711972128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                       ppGfrF Ptdeelvv+yL+kk++++ +++  +i+evd+yk++Pw+Lp k+  +ekewyfF++rd+ky+ g+r+nra+ sgy kat  dk++ +
  PSME_00020824-RA  71 PPGFRFFPTDEELVVHYLCKKAASQIIPV-PIIAEVDLYKYDPWQLPDKALFGEKEWYFFTPRDRKYPYGSRPNRAAGSGYQKATCADKPINA 162
                       9****************************.88***************8777899*************************************** PP

               NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       k +++ vg+kk Lvfy  +apkg+kt+W+mheyrl
  PSME_00020824-RA 163 KgGKKRVGIKKALVFYARKAPKGSKTNWIMHEYRL 197
                       966777***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-5663223IPR003441NAC domain
PROSITE profilePS5100554.72370223IPR003441NAC domain
PfamPF023652.3E-2471197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
LTSIDLEEWM KFEVVESIQS QLFHGIFSHN GPKSGKTQSP TTNMGTSLGD FHEEQPWILK  60
NMDYHEHNQW PPGFRFFPTD EELVVHYLCK KAASQIIPVP IIAEVDLYKY DPWQLPDKAL  120
FGEKEWYFFT PRDRKYPYGS RPNRAAGSGY QKATCADKPI NAKGGKKRVG IKKALVFYAR  180
KAPKGSKTNW IMHEYRLADV SRPARKKGSL RLDDWVLCRI YNKNISAEKL ALDQKEGPMD  240
APMESIDEKD MEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-787122918171NO APICAL MERISTEM PROTEIN
1ut4_B5e-787122918171NO APICAL MERISTEM PROTEIN
1ut7_A5e-787122918171NO APICAL MERISTEM PROTEIN
1ut7_B5e-787122918171NO APICAL MERISTEM PROTEIN
4dul_A5e-787122918171NAC domain-containing protein 19
4dul_B5e-787122918171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008792531.16e-89NAC domain-containing protein 68-like isoform X2
RefseqXP_010922868.28e-89NAC domain-containing protein 68
SwissprotQ52QH48e-85NAC68_ORYSJ; NAC domain-containing protein 68
TrEMBLA0A0D6R3P91e-108A0A0D6R3P9_ARACU; Uncharacterized protein
STRINGGSMUA_Achr4P02390_0011e-87(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01720.11e-86NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Taga Y, et al.
    Role of OsHSP90 and IREN, Ca2+ dependent nuclease, in plant hypersensitive cell death induced by transcription factor OsNAC4.
    Plant Signal Behav, 2009. 4(8): p. 740-2
    [PMID:19820348]
  3. Xia N, et al.
    Characterization of a novel wheat NAC transcription factor gene involved in defense response against stripe rust pathogen infection and abiotic stresses.
    Mol. Biol. Rep., 2010. 37(8): p. 3703-12
    [PMID:20213512]
  4. Takasaki H, et al.
    The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
    Mol. Genet. Genomics, 2010. 284(3): p. 173-83
    [PMID:20632034]
  5. Nakayama A, et al.
    Genome-wide identification of WRKY45-regulated genes that mediate benzothiadiazole-induced defense responses in rice.
    BMC Plant Biol., 2013. 13: p. 150
    [PMID:24093634]
  6. Ootsubo Y,Hibino T,Wakazono T,Mukai Y,Che FS
    IREN, a novel EF-hand motif-containing nuclease, functions in the degradation of nuclear DNA during the hypersensitive response cell death in rice.
    Biosci. Biotechnol. Biochem., 2016. 80(4): p. 748-60
    [PMID:26766411]