PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020912-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family B3
Protein Properties Length: 130aa    MW: 15294.3 Da    PI: 6.2491
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020912-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3361.2e-11521281796
                       E--HHH.HTT.---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
                B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkl.iyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       ++p  f++++ +g++     +t+ed +g sW+++   y ++++r v+t GW +F+++++ k+gD+++ +  +++ f  ++++
  PSME_00020912-RA  52 YFPIMFMTKYlSGSQ---GIVTFEDCDGFSWRIEWyAYLQSGRRLVFTIGWYKFASDHNAKDGDIFLVEILNSNHF--KFQI 128
                       678889999974442...36**************9456999999*************************7665666..6665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.88336130IPR003340B3 DNA binding domain
SuperFamilySSF1019361.55E-1350129IPR015300DNA-binding pseudobarrel domain
CDDcd100172.57E-1052130No hitNo description
PfamPF023628.4E-1152129IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-1352129IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 130 aa     Download sequence    Send to blast
IYFYNGSNGK LESNMDIRAE VIENGESWLF VDNETSMMGT KGSFKNRYKP HYFPIMFMTK  60
YLSGSQGIVT FEDCDGFSWR IEWYAYLQSG RRLVFTIGWY KFASDHNAKD GDIFLVEILN  120
SNHFKFQIFP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.16e-07related to vernalization1 1