PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020913-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 604aa    MW: 65072.9 Da    PI: 5.9196
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020913-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding551.9e-173582148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      +g+WT  Ed +lv++vk++G g+W+++ ++ g+ R++k+c++rw ++l
  PSME_00020913-RA 35 KGPWTSAEDAILVEYVKKHGEGNWNAVQKHSGLFRCGKSCRLRWANHL 82
                      79******************************************9986 PP
2Myb_DNA-binding52.11.5e-1688131146
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +g++T+eE++++++++++lG++ W++ a+ ++ gRt++++k++w++
  PSME_00020913-RA  88 KGAFTAEEEQIIIELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 131
                       799*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.2143082IPR017930Myb domain
SuperFamilySSF466893.74E-3033129IPR009057Homeodomain-like
SMARTSM007172.1E-153484IPR001005SANT/Myb domain
PfamPF002492.2E-153582IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-243689IPR009057Homeodomain-like
CDDcd001678.10E-123782No hitNo description
PROSITE profilePS5129426.24383137IPR017930Myb domain
SMARTSM007173.5E-1687135IPR001005SANT/Myb domain
PfamPF002492.7E-1588131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2590136IPR009057Homeodomain-like
CDDcd001671.17E-1190131No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0045926Biological Processnegative regulation of growth
GO:0048235Biological Processpollen sperm cell differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 604 aa     Download sequence    Send to blast
MSSETSESGA TKEQQTLDGG EVIGGGNGGG GSLKKGPWTS AEDAILVEYV KKHGEGNWNA  60
VQKHSGLFRC GKSCRLRWAN HLRPNLKKGA FTAEEEQIII ELHAKLGNKW ARMAAQLPGR  120
TDNEIKNYWN TRIKRRQRQG LPLYPPDLPL QQSNNDNQQN QQPVNGADAA ATQHNHSQSH  180
HEFLSNSTKL EIPNVTFDGL KPGQHALTYT SFPALTEVSM SSILNQAMGL SQGYRMVNPI  240
QRAKRIRDSE SMMSFGIGGG GIPPFGQFVD DTPTKSIGEP CFKAARRLSY AQPARLDGLS  300
YSQPARLDGF VANGFPYDPN LSNRNSNHNP STPFGSLLIG SHALLNGNLS PPTPLPGVKL  360
ELPSSQPAES VHTGTRLETV NTHTDNNSYT LSPPVPSTHV DGFSPHNSGL LEALLHESQA  420
MGSGGNKRSS EMITQLPPIS SRSNLSNCVV ASQSETEYGE YSDPITPLGG PAASVFSENT  480
PPLSTGPWDE SSSAQSAIGN GVNIKTEERN ELMSSANCGD EDFSTLLNFA RPDVSAVSDW  540
YDSHTEPGKE QSAVSDALAT LFNDDFCVDI QQLTSGPSTS NQAWGLGSCH WNNMPGVTQI  600
ADLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-32331365107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00490DAPTransfer from AT5G06100Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1578470.0JX157847.1 Larix kaempferi myb domain protein 33 (MYB33) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLR4IK400.0R4IK40_9SPER; Myb domain protein 33
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06100.36e-83myb domain protein 33