PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00020936-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 250aa    MW: 28834.6 Da    PI: 6.8659
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00020936-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.91.5e-151563148
                      TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                      r +WTt Ed++l ++++ +G + +W++I+ + g++R++k+c++rw +yl
  PSME_00020936-RA 15 RRPWTTAEDLILREYINIHGLEgRWSSIPLKAGLNRSAKSCRLRWMNYL 63
                      679*****************999************************97 PP
2Myb_DNA-binding52.31.3e-1669114148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ +t+E+el+ +++++lG++ W++Ia +++ gRt++++k++w+++l
  PSME_00020936-RA  69 RGNISTDEEELIFRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 114
                       7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.6741063IPR017930Myb domain
SuperFamilySSF466896.97E-2713110IPR009057Homeodomain-like
SMARTSM007171.2E-101465IPR001005SANT/Myb domain
PfamPF002497.5E-141563IPR001005SANT/Myb domain
CDDcd001675.68E-91763No hitNo description
Gene3DG3DSA:1.10.10.604.1E-211770IPR009057Homeodomain-like
PROSITE profilePS5129424.1864118IPR017930Myb domain
SMARTSM007176.3E-1668116IPR001005SANT/Myb domain
PfamPF002491.7E-1469114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-2471118IPR009057Homeodomain-like
CDDcd001671.58E-1073114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MGRPSRCSKE DGLNRRPWTT AEDLILREYI NIHGLEGRWS SIPLKAGLNR SAKSCRLRWM  60
NYLCPNIKRG NISTDEEELI FRLHRLLGNR WSLIAGRLPG RTDNEIKNYW NTHLKKKVAI  120
RLNKRDRIQD KMTEKDFASG MDFVRANQVA VNIENHLSDV QSFDEEWRTM FENHLSDVQS  180
FDEEWSTMLE AHSFTNSFSG IPDVSVKDWK CPHMEMFSCF TGIISEGCAV ESSPSPISSS  240
IDFLINGTSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-241311825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK9LYX23e-56K9LYX2_9ASPA; R2R3 MYB (Fragment)
STRINGVIT_09s0002g01400.t015e-54(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-51myb domain protein 5