PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021027-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 282aa    MW: 31480.3 Da    PI: 8.7471
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021027-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.3e-18162216256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       +k+ +++k q  +Lee F +nr p+ ++r++LA++l+L+  qV vWFqN+Ra+ k
  PSME_00021027-RA 162 KKKPRLSKGQYARLEESFSNNRLPTVNQRQDLATELKLPLHQVEVWFQNKRARTK 216
                       56667999*********************************************98 PP
2HD-ZIP_I/II84.11.9e-27162249188
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                       +kk rlsk q + LEesF++++  + +++++la+eL+l  +qv+vWFqn+RARtk  q+E+d++ Lkr+ ++l++en rL++e +eLr
  PSME_00021027-RA 162 KKKPRLSKGQYARLEESFSNNRLPTVNQRQDLATELKLPLHQVEVWFQNKRARTKFNQTEMDFKLLKRHNETLVTENIRLQQELQELR 249
                       5999**************6666667899***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.633158218IPR001356Homeobox domain
SuperFamilySSF466892.31E-16159219IPR009057Homeodomain-like
SMARTSM003891.3E-12160222IPR001356Homeobox domain
CDDcd000862.20E-12162216No hitNo description
Gene3DG3DSA:1.10.10.603.1E-16162216IPR009057Homeodomain-like
PfamPF000461.9E-15162216IPR001356Homeobox domain
PROSITE patternPS000270193216IPR017970Homeobox, conserved site
SMARTSM003409.0E-12218261IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MDQDCDTELR LGLNISSARA SRTQDLECAS QRAIQGSSLQ LNLGSSVVPP ASGTLPLKKT  60
SHGIDGGSDE QRSPGEAKAA FRQVPVSRRF DVNKFLVLSH HNDEAAAINV WSSNSTVDTR  120
AISSDSGYGV DFKRMQAAAE ELENDRACSR VHNDVEEEGA TKKKPRLSKG QYARLEESFS  180
NNRLPTVNQR QDLATELKLP LHQVEVWFQN KRARTKFNQT EMDFKLLKRH NETLVTENIR  240
LQQELQELRY LKLASPVVPR ATLIVCPSCH RIAAANNSRP FG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NKN44e-65A9NKN4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47370.17e-28Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein