PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021124-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 329aa    MW: 37927.2 Da    PI: 4.2787
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021124-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.31.9e-1186142354
                       --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 
                       kRt    +q ++L   Fe+   +ps++e+++++++l    ++++++V++WF+N +++
  PSME_00021124-RA  86 KRTEEDINQKRILIPKFESsMVKPSRHEIKRITAQLqefgQVEDANVFYWFHNTKYR 142
                       78999999**********98**********************************997 PP
2Wus_type_Homeobox59.39e-2087142560
  Wus_type_Homeobox   5 RWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 
                        R     +Q +iL   ++s ++ P+++ei+rita+L+e+G++ed+NVfyWF N k R
   PSME_00021124-RA  87 RTEEDINQKRILIPKFESSMVKPSRHEIKRITAQLQEFGQVEDANVFYWFHNTKYR 142
                        5555668999*******************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.6E-586146IPR009057Homeodomain-like
PfamPF000464.1E-986142IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSHHDEADED EGNDDDDDDE NEDDDGGDED EAMNNMKSKP RQSWTSMFKV KPSTSDNQGN  60
QGYASSNSSA ISVQRPRYEA EVETNKRTEE DINQKRILIP KFESSMVKPS RHEIKRITAQ  120
LQEFGQVEDA NVFYWFHNTK YRIFNRVERT EKNTKAIINV ASNTADSLYN TGESYSSYVL  180
EDPFFTQDDP FFTHQDRFFH TGEWYSSYDP FFTHDDPFFT HHDNPFFIHQ EDFHMQMNEE  240
MSNDQCSSMQ AVATAAGVFN EGGSFSYEHL IPILINKIPV EVPVGSINVR DAFGENAVLL  300
HSIGEPILVN EWGSPWNVCS KELSITWYI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5LMH96e-64D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.13e-16homeobox-3