PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021126-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 292aa    MW: 33451 Da    PI: 5.5577
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021126-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.41.4e-1459116254
                       T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRak 54 
                       ++R+++t+eq ++L   Fe+   + s++e++ ++++l    ++++++V++WF+Nr+++
  PSME_00021126-RA  59 KPRWKPTEEQKRILMPKFESgMVKASRHEIKTITTQLqefgQVEDANVFYWFHNRKYR 116
                       89*****************99***********************************98 PP
2Wus_type_Homeobox74.61.5e-2458116260
  Wus_type_Homeobox   2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60 
                        +++RW Pt+eQ +iL   ++sG++  +++ei+ it++L+e+G++ed+NVfyWF Nrk R
   PSME_00021126-RA  58 TKPRWKPTEEQKRILMPKFESGMVKASRHEIKTITTQLQEFGQVEDANVFYWFHNRKYR 116
                        689******************************************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.69E-755120IPR009057Homeodomain-like
PROSITE profilePS500718.71455120IPR001356Homeobox domain
SMARTSM003890.006857124IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.4E-459116IPR009057Homeodomain-like
PfamPF000463.4E-1259116IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    Send to blast
MDNMKSNPRQ SWTSMFKVKP STSDNEGYGS SNSSAISVQR PGYEGTSSAN EERSWHKTKP  60
RWKPTEEQKR ILMPKFESGM VKASRHEIKT ITTQLQEFGQ VEDANVFYWF HNRKYRIFNR  120
VERTEKNTKA IINVASNTAG SLYNTGESYS SYVLEDPFFT HRDRFFHTGE WYSSYDPFFT  180
QDDPFFTHHD NPFFIHQEDF HMQMNEEMSN DQCSSMQAVA TAAGVFNEGT GGSVCYEHLI  240
PVLINKIPVE VLVGSINVRD AFGENADLLH STGEPVLVNE WGFTLECLQQ GA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLD5LMH91e-87D5LMH9_PICAB; Putative wuschel homeobox protein WOX8/9
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-20homeobox-3