PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021128-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WOX
Protein Properties Length: 193aa    MW: 22626.2 Da    PI: 4.6038
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021128-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.61.2e-093372454
                      S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHH CS
          Homeobox 24 ypsaeereeLAkkl....gLterqVkvWFqNrRak 54
                      +ps++e++++A++l    ++++++V++WF+N +++
  PSME_00021128-RA  3 KPSRHEIKRIAAQLqefgQVEDANVFYWFHNTKYR 37
                      8*******************************997 PP
2Wus_type_Homeobox50.55e-171372460
  Wus_type_Homeobox 24 lrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaR 60
                       ++ P+++ei+ri+a+L+e+G++ed+NVfyWF N k R
   PSME_00021128-RA  1 MVKPSRHEIKRIAAQLQEFGQVEDANVFYWFHNTKYR 37
                       689*******************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.01E-5341IPR009057Homeodomain-like
PfamPF000463.0E-7337IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MVKPSRHEIK RIAAQLQEFG QVEDANVFYW FHNTKYRIFN RVERTEKNTK AIINVASNTA  60
DSLYITGESY SSYVLEDPFF TQDDPFFTHQ DRFFHTGEWY SCYDPFFTQD DPFFTHHDNP  120
FFIHQEDFHM QMNEEMSNDQ CSSMQAVATA AGVFNEGTFA DTTGSIFSYL ISPVRYLVYY  180
VYSAAYLVCI VLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.13e-13homeobox-3