PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021158-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 559aa    MW: 62968.6 Da    PI: 8.7175
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021158-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.23.9e-29346403258
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                       +Dg++WrKYGqK+ +++++prsYYrC++a +Cpvk++v+r+a+d ++v+++YegeH+h
  PSME_00021158-RA 346 RDGFQWRKYGQKMTRNNPHPRSYYRCAMApSCPVKRQVQRCADDSTIVVTIYEGEHTH 403
                       7***************************99***************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-30334403IPR003657WRKY domain
SuperFamilySSF1182903.79E-26337404IPR003657WRKY domain
PROSITE profilePS5081125.637340406IPR003657WRKY domain
SMARTSM007741.7E-34345405IPR003657WRKY domain
PfamPF031065.9E-25347403IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
VNLVKSKLRL SRPTGTRPVY ASMLPPYKHV PEGLQETIDR FTPFLATILF LSAYFSQRSS  60
FSLHISHNDP FSCNALQLAI TLKPKPKNQY TDGMEGHKSK MMTVIVAEIN RMNEENQNLN  120
TMLNRMINNY DDLKKHIKFL VQEKQQLPSV DPIQIFNPHR KSEDNFNLRI LSPRPAEIDS  180
SGAVSHQTYH SLETRDQFRE LEVNNPKFMD DMQLPSKQRK INYVQMNQSQ NGMIINSSIN  240
DNLGVDSNQT HHPSDCHERF WDQMDGKKLK YMDDIQLPSK KRKINYVQLG QIQNGMVDSS  300
MDDSLISDEL PNKNQSGLSK GSREQMAASP KRIVSVRTRT EASVIRDGFQ WRKYGQKMTR  360
NNPHPRSYYR CAMAPSCPVK RQVQRCADDS TIVVTIYEGE HTHFLSPLAI AVMHAGSSNQ  420
LIDEDLHRTN RVAENQLIPF STSIARISTS SPFPTITLDL LDNQPNAGLH MQPHLKAGSF  480
QHLNPLPNNM GHALDLNQLD QSPIMDSVAS IKADPNFTAA LAVAIAGSML KLGGPIEGMP  540
KHVALAGQYN DGSTLEACV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-20332407275WRKY transcription factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU2697441e-37EU269744.1 Pinus monticola WRKY transcription factor PmWRKY96 mRNA, partial cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.11e-41WRKY family protein