PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021282-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 193aa    MW: 21406.7 Da    PI: 4.8932
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021282-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.73.3e-142372255
               AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                      ++kG r++k +g+Wv+e r p+    + +r++lg++++ e+Aa+a++ a  +l+g
  PSME_00021282-RA 23 QFKGTRRRK-WGKWVSETRMPN----StRRIWLGSYDSQEKAARAYDFAVYCLRG 72
                      789999888.*******99982....35*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.58E-262282No hitNo description
PROSITE profilePS5103221.3112380IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-262381IPR001471AP2/ERF domain
SuperFamilySSF541711.57E-192382IPR016177DNA-binding domain
SMARTSM003809.1E-292386IPR001471AP2/ERF domain
PRINTSPR003672.1E-102435IPR001471AP2/ERF domain
PfamPF008472.0E-92472IPR001471AP2/ERF domain
PRINTSPR003672.1E-106282IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MAKPSSNQNG HSRPENCPVK LTQFKGTRRR KWGKWVSETR MPNSTRRIWL GSYDSQEKAA  60
RAYDFAVYCL RGSKAKLNFP HSLPEIPNAS SLSPPQIQAA AAKFAGEEFR LPSEDDAALS  120
YSDSEGNCGK DDAAFSSFGS EEDFGNEGQD VWAEQCPTFW DSVVLECLQG GKSLNLNDFP  180
PLDASMDYFG VLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1423811473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010261769.13e-37PREDICTED: ethylene-responsive transcription factor ERF017-like
TrEMBLA9NQM12e-76A9NQM1_PICSI; Uncharacterized protein
STRINGXP_010261769.11e-36(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.16e-37ERF family protein