PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021304-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family TALE
Protein Properties Length: 154aa    MW: 18010.1 Da    PI: 6.0899
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021304-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.41.4e-09841172255
                       SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
          Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                        +yps++e+  LA+ +gL+++q+ +WF N+R ++
  PSME_00021304-RA  84 WPYPSETEKIALAECTGLDQKQINNWFINQRKRH 117
                       58*****************************985 PP
2ELK444.4e-153758122
               ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                      ELK++LlrKYsgyL+sLkqEF+
  PSME_00021304-RA 37 ELKDHLLRKYSGYLSSLKQEFM 58
                      9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011882.0E-83758IPR005539ELK domain
PROSITE profilePS5121311.5753757IPR005539ELK domain
PfamPF037894.8E-123758IPR005539ELK domain
PROSITE profilePS5007112.08257120IPR001356Homeobox domain
SuperFamilySSF466894.28E-2059133IPR009057Homeodomain-like
SMARTSM003894.8E-1259124IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.2E-2862123IPR009057Homeodomain-like
PfamPF059205.0E-1777116IPR008422Homeobox KN domain
CDDcd000861.51E-1183121No hitNo description
PROSITE patternPS00027095118IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001708Biological Processcell fate specification
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
ENDEKTEGGG SSEEVEDGSG GETDFQEVDH HAVEDRELKD HLLRKYSGYL SSLKQEFMKK  60
KKKGKLPKDA RQKLLDWWTV HYKWPYPSET EKIALAECTG LDQKQINNWF INQRKRHWKP  120
SEDMQLMAMD SQSPHGAALY VERHLMTEGY HLDC
Functional Description ? help Back to Top
Source Description
UniProtProbably binds to the DNA sequence 5'-TGAC-3'.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankPMU900920.0U90092.1 Picea mariana homeobox transcription factor SKN2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002285521.13e-68PREDICTED: homeobox protein knotted-1-like 2
SwissprotO041351e-64KNAP2_MALDO; Homeobox protein knotted-1-like 2
TrEMBLA9NR061e-109A9NR06_PICSI; Uncharacterized protein
TrEMBLQ9ZR901e-108Q9ZR90_PICMA; Homeobox transcription factor SKN2
TrEMBLQ9ZTC01e-108Q9ZTC0_PICAB; Homeobox protein
STRINGVIT_18s0001g08380.t011e-67(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.12e-53KNOTTED-like from Arabidopsis thaliana