PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021355-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB
Protein Properties Length: 298aa    MW: 34202.7 Da    PI: 8.8715
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021355-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.12.6e-151461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WTt Ed +l ++++ +G g Wk I+++ g +R++k+c+ rw++yl
  PSME_00021355-RA 14 RGAWTTMEDRILSEYIRIHGDGGWKNIPKRAGIKRCGKSCRMRWLNYL 61
                      89******************************55************97 PP
2Myb_DNA-binding521.6e-1667112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ +++E++l+++++++lG++ W++Ia +++ gRt++++k++w++++
  PSME_00021355-RA  67 RGNISPDEEDLIIRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHM 112
                       7899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.588961IPR017930Myb domain
SuperFamilySSF466893.29E-2712108IPR009057Homeodomain-like
SMARTSM007174.7E-121363IPR001005SANT/Myb domain
PfamPF002492.6E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-211568IPR009057Homeodomain-like
CDDcd001671.97E-91661No hitNo description
PROSITE profilePS5129426.25862116IPR017930Myb domain
SMARTSM007179.9E-1666114IPR001005SANT/Myb domain
PfamPF002496.1E-1567111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-2569116IPR009057Homeodomain-like
CDDcd001672.76E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MGRSPCPSKE GLSRGAWTTM EDRILSEYIR IHGDGGWKNI PKRAGIKRCG KSCRMRWLNY  60
LRPDIKRGNI SPDEEDLIIR LHRLLGNRWS LIAGRLPGRT DNEIKNYWNT HMSKKLRLSI  120
NKCQPQTSQN HSTISKASAR VQNRVFKATA SKITKPVRYF ELLRPNGYNG YVCSERRSHE  180
AFKLCNIKET RKSSLPDLLL NDSIGNEESE HIAFAMVDNL VETGATISTS SVSSLADQQS  240
PHSHHLDESL LYLNDQLSPV CNQLPFPSEC STDFASEYFY RGMEELYDWI FEFDNLQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C6e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1167521e-110BT116752.1 Picea glauca clone GQ03806_A01 mRNA sequence.
GenBankKU1312191e-110KU131219.1 Picea abies transcription factor MYB30 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMJ61e-133B8LMJ6_PICSI; Uncharacterized protein
STRINGGLYMA13G16890.12e-70(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-59myb domain protein 3