PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021358-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 265aa    MW: 30333.2 Da    PI: 6.2521
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021358-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.1e-142264145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                      rg+ + +E+el+++++ +lG++ W++Ia ++  gRt++++k++w+
  PSME_00021358-RA 22 RGNISRDEEELIIRLHSLLGNR-WSLIAGRLT-GRTDNEIKNYWN 64
                      788999****************.********9.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.333116IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.1E-10228IPR009057Homeodomain-like
SuperFamilySSF466896.74E-19371IPR009057Homeodomain-like
PROSITE profilePS5129424.3351771IPR017930Myb domain
SMARTSM007175.6E-132169IPR001005SANT/Myb domain
PfamPF002493.9E-122264IPR001005SANT/Myb domain
CDDcd001672.79E-92664No hitNo description
Gene3DG3DSA:1.10.10.601.0E-182967IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    Send to blast
IKRCGKSCRM RWLNYLRPDI KRGNISRDEE ELIIRLHSLL GNRWSLIAGR LTGRTDNEIK  60
NYWNIHMSKK LGLLMNRCQP KTSQNHSTIS KPSARVQNRV FKATASKITK PLEFFETLRP  120
NGYNGDLCTD RRSDEAFKFC NIEETTKSSL RDLLLNDSIG IEVSEHIGFA MVDNLVETGA  180
TVSTSVSTLV DQKSPHSDCL AGDAATLEES LLYLNDQLSP VCNQLHSPSE CSTDFASEDF  240
YSEMEEPYDR AQNLDWIFEF YYLQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-1737140108B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1666414e-39AY166641.1 Picea mariana transcription factor MYB7 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMJ65e-96B8LMJ6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.18e-38MYB family protein