PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021510-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 361aa    MW: 39542.3 Da    PI: 7.1917
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021510-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.51.5e-15193239455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        hn  E+rRR+riN+++  L+ l+P++      K +Ka++L +A+eY+k+Lq
  PSME_00021510-RA 193 VHNLSEKRRRNRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKKLQ 239
                       6*************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-18186244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.885189238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.70E-16192241No hitNo description
PfamPF000105.5E-13193239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.8E-18193241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-15195244IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
RSASSKSNNT FSTLSGFLLS RENTEIRSSG FGLRVMAHKC SEPGFLVNNP VLWDDEDALN  60
RTYNYNYYTD LWGGLPLSSS APGTARTSAE DCMPEVMAVS EALESDYRRM NTINNNVSAD  120
TQLSCETAAT SSSGGSMSSP SKSEKVIESS KRKVLMGTKD SECHSQKAQE DSGENFKHCS  180
TGTSSKRSRA AEVHNLSEKR RRNRINEKMK ALQNLIPNSN KTDKASMLDE AIEYLKKLQI  240
QMLSARSGID ISSIRWLAQM PHLQIQQMPE ACVATDQHAG ISLSMPVGSG LMNTNQGSEK  300
RPLPLNDLYN SAALGNTAIP INLSSARIDD HQACKVDRPQ GHFTLPQLPT TTQVGEDIVV  360
M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0843860.0EF084386.1 Picea sitchensis clone WS0272_M05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NSU41e-179A9NSU4_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.22e-31phytochrome interacting factor 3