PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021589-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 455aa    MW: 50194.4 Da    PI: 8.9041
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021589-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.55.3e-06136158123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+C++C++ F r  nL+ H r+H
  PSME_00021589-RA 136 YVCEICNQGFQRDQNLQMHRRRH 158
                       9*********************9 PP
2zf-C2H215.35.7e-05213235123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC +C+k +  +s++k H++t+
  PSME_00021589-RA 213 WKCDKCSKGYAVQSDYKAHLKTC 235
                       58*******************98 PP
3zf-C2H210.90.0014243261523
                       TTTEEESSHHHHHHHHHHT CS
           zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                       dCg++Fsr +++  H+ t+
  PSME_00021589-RA 243 DCGRVFSRVESFIEHQDTC 261
                       9***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.99E-6135158No hitNo description
Gene3DG3DSA:3.30.160.601.9E-5135158IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.97136158IPR007087Zinc finger, C2H2
SMARTSM003550.0052136158IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280138158IPR007087Zinc finger, C2H2
SMARTSM00355130177207IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4204234IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.99E-6208233No hitNo description
SMARTSM0035551213240IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MRVSLYFSVF YCASEWLTVF HWVSKAGAFD NLCLLFSPIF YKVAASFSSS SRSNMTSLPS  60
PGTAASGTSG SIHGTYLHIS TVPGVNSSSD GTSFPFPVSS TNSNSNKRKR RPAGTPDPDA  120
EVVALSPKTL MESDRYVCEI CNQGFQRDQN LQMHRRRHKV PWKLLKRPTP EVRKRVYVCP  180
DPTCLHNDPC HALGDLVGIK KHFRRKHSIE KQWKCDKCSK GYAVQSDYKA HLKTCGTRGH  240
SCDCGRVFSR VESFIEHQDT CITAKERTAF GYCIDQPSLP SLTAGTRSSN DTLSATRSGL  300
SSVGLQFDSG KLHEQAANWL NMELRELQFL PAKHQSDIFE TAIRQANNAA AGTVTGDHIR  360
SLGCDPGSNL CTSPPKEHRF LDDTSESPLR LQLSIGLSSD PSANRENKPY VKPDQFGVVN  420
KRQRGNRAGI QIALGLTLSS NDLFPGNNNV EANSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-19210269463Zinc finger protein JACKDAW
5b3h_F7e-19210269463Zinc finger protein JACKDAW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023760574.11e-111protein indeterminate-domain 14-like
TrEMBLA0A2J6LKS31e-110A0A2J6LKS3_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68130.11e-101indeterminate(ID)-domain 14