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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00021721-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | bHLH | ||||||||
| Protein Properties | Length: 230aa MW: 26841.9 Da PI: 7.8217 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 25.9 | 1.7e-08 | 77 | 121 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+E+ RR+r++s +L +llP+ + Kl+ e+A++YI++L+
PSME_00021721-RA 77 FAEQMRRKRMKSLCTQLESLLPStP-----AKLDRCGLFEEAINYIRKLE 121
58*********************55.....9****************996 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 12.366 | 70 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 4.10E-6 | 70 | 122 | No hit | No description |
| SuperFamily | SSF47459 | 6.54E-11 | 71 | 133 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 3.3E-11 | 72 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.5E-4 | 76 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 7.1E-6 | 78 | 121 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 230 aa Download sequence Send to blast |
MASDCLFSYS LPAATRTLMY SNVSKCDRQL DCRVTASRKR PSEIDLVELQ VYTDLQEKVW 60 RDVDHMMKFS TKETQIFAEQ MRRKRMKSLC TQLESLLPST PAKLDRCGLF EEAINYIRKL 120 EENMHQLKKK KDSLLAIQSG KTVNENTEIK VAVQFYGREA IINITGERGP RHMWRILEEL 180 ENHGLDVETS QLFTGEFFVL IFFHVKFREN ISQDPAEILT SVECRLKSTY |
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | EF086459 | 0.0 | EF086459.1 Picea sitchensis clone WS02745_D02 unknown mRNA. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A9NYK8 | 1e-138 | A9NYK8_PICSI; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G49770.1 | 7e-09 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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