PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021723-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 229aa    MW: 26751.5 Da    PI: 8.4809
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021723-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH292e-0975120755
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +E+ RR+r++s   +L +llP+    +s Kl+     e++++YI++L+
  PSME_00021723-RA  75 FAEQMRRKRMKSLCTQLESLLPST---SSAKLDRCGLFEETINYIRKLE 120
                       58*********************9...9******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-1165132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.18E-568121No hitNo description
PROSITE profilePS5088812.01768119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-1170133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.9E-574125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-776120IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MASNCLFSYS ISATRTVHSN VPQCDGQLDF RVTPSRKRRS EVDLVGLQEY NDLQEKVWRD  60
VDHMMKFSTK ETQIFAEQMR RKRMKSLCTQ LESLLPSTSS AKLDRCGLFE ETINYIRKLE  120
ENMQQLKRKR DSLLAIQSGK TANENIEIKV AVEFYGREAI ISITSQRGPR HMWRILEELE  180
KHGLDVATEQ LFTGESFVFV FFHVNFRDNI SHDPTQIRTS LECRLKSTY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13439SRKRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0864590.0EF086459.1 Picea sitchensis clone WS02745_D02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMX61e-136B8LMX6_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-06bHLH family protein