PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021724-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 275aa    MW: 32026.4 Da    PI: 8.1279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021724-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.78.9e-08124168855
                       HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +E+ RR+r++s   +L +llP +   +  Kl+     +++++YI++L+
  PSME_00021724-RA 124 AEQMRRKRMKSLCTQLESLLPAS---TPAKLDRCGLFKETINYIRKLE 168
                       7*********************9...99*****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-10113180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.553116167IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.72E-5118169No hitNo description
Gene3DG3DSA:4.10.280.101.2E-10118181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-4122173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.7E-5124168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
ARHPDIISKT VYEVSHASTR QYNTTTSSVK ATATTLWESE GRNLGELIMA SDCLFSYSFS  60
ATSTLYPNVS QCDRQVDCRV TASRKRQSEV DLVEFQDYND LQEKVWRDVD HMMKFPTKET  120
QIFAEQMRRK RMKSLCTQLE SLLPASTPAK LDRCGLFKET INYIRKLEEN MHQLKRKKDS  180
LLGFAIQSGK TGNENTEIKL ALQEAIINIT GQRRPRHMWR ILEELENHGL DVETSQLFTG  240
EFFVLVFFHV KFRENIYQDR AEIQTSLECR LKSTY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0864590.0EF086459.1 Picea sitchensis clone WS02745_D02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NYK81e-129A9NYK8_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.13e-07bHLH family protein