PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021940-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 362aa    MW: 40005.3 Da    PI: 10.0875
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021940-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.3e-31292349359
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D+++WrKYGqK++kgs++pr+YY+C+s  gCp++k+vers ed +++++tYegeHnh+
  PSME_00021940-RA 292 DEFSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERSLEDASMLIVTYEGEHNHS 349
                       99***********************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.6E-19244288IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.3E-33278349IPR003657WRKY domain
PROSITE profilePS5081129.654285351IPR003657WRKY domain
SuperFamilySSF1182903.66E-26288349IPR003657WRKY domain
SMARTSM007742.4E-38290350IPR003657WRKY domain
PfamPF031067.7E-27292348IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MASKLYMKHG IMDPLNISLS LNTQRDRDVQ AMARAGLESA QRMMSILSQK HQQHQQEQAQ  60
QDFGLATEEA LSKLNKAVSL LSRKGHARVR RGPLQAQSAA GSGSEQLFMD GPNFIDLDSP  120
TPHASASIYS SSSSDFAHCV KQFLPCQSSS SGVLSADTNR HQQLHQQMHY PPLQLQHISP  180
QADVMFRNGY IKLDNSMSCT PTLSSTKSFM SSLSMDGSIA NDKQLLQYQS ISAAQERIPG  240
ASSKRKCSGK GDDSSKCGST GRCHCSKRRK LRVKRTIRVP AISSKLADIP PDEFSWRKYG  300
QKPIKGSPHP RGYYKCSSMR GCPARKHVER SLEDASMLIV TYEGEHNHSR LLSSNTSLIV  360
HS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-22278348271WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1243240.0BT124324.1 Picea sitchensis clone WS0472_P20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008235315.13e-90PREDICTED: probable WRKY transcription factor 21
TrEMBLD5ADG50.0D5ADG5_PICSI; Uncharacterized protein
STRINGXP_008235315.11e-89(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28650.15e-57WRKY DNA-binding protein 74