PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00021974-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 261aa    MW: 28801.7 Da    PI: 8.414
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00021974-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26083.82.5e-26496188
            DUF260  1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88
                      +C++C+vlr++C+++C+l p++     +++q++++ +++k++G++ +++l+++ pe+ r+++++sl+yeA+ r+ +P+yG++g++ ++++  +
  PSME_00021974-RA  4 SCNGCRVLRKGCSESCILKPCLqwistAESQANATIFLAKFYGRAGLVNLISNGPEHLRPAIFRSLLYEACGRMVNPIYGSLGLVCSGNWAAR 96
                      6*********************9999777899********************************************************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.6613109IPR004883Lateral organ boundaries, LOB
PfamPF031957.3E-22496IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSESCI LKPCLQWIST AESQANATIF LAKFYGRAGL VNLISNGPEH  60
LRPAIFRSLL YEACGRMVNP IYGSLGLVCS GNWAARLQAG VESILRGNWA PHILPMEAMA  120
GRKVQRSVKA RGRFKGFSHG KSKRNEGERE PASDHIDSSS KSDGWGDITN VLEKAAENGE  180
FDGKYVDKYS TFLSSREHER FGTANQAKIE YCHDLCNLKT SETEAEAPCN AVELELTLGS  240
HVSFLRTADK LSAGEWRPPL Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010263769.12e-60PREDICTED: LOB domain-containing protein 41-like
TrEMBLA0A1U8AE094e-59A0A1U8AE09_NELNU; LOB domain-containing protein 41-like
STRINGXP_010263769.17e-60(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.14e-58LOB domain-containing protein 40