PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00022003-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family HD-ZIP
Protein Properties Length: 313aa    MW: 35049.7 Da    PI: 8.0964
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00022003-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-18172226256
                       T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
          Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                       rk+ +++keq   Lee F++n+ ++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  PSME_00022003-RA 172 RKKLRLSKEQSALLEESFKENSSLNPKQKQALAKRLNLRPRQVEVWFQNRRARTK 226
                       778899***********************************************98 PP
2HD-ZIP_I/II123.41.1e-39172261191
       HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                       +kk+rlskeq++lLEesF+e++ L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l++en+rL+ke +eLr +l
  PSME_00022003-RA 172 RKKLRLSKEQSALLEESFKENSSLNPKQKQALAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCESLTDENRRLQKELQELR-AL 261
                       69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046181.7E-915122IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.601.6E-17160226IPR009057Homeodomain-like
SuperFamilySSF466894.18E-18166229IPR009057Homeodomain-like
PROSITE profilePS5007117.491168228IPR001356Homeobox domain
SMARTSM003892.9E-16170232IPR001356Homeobox domain
PfamPF000468.4E-16172226IPR001356Homeobox domain
CDDcd000863.80E-17172229No hitNo description
PROSITE patternPS000270203226IPR017970Homeobox, conserved site
SMARTSM003404.5E-26228271IPR003106Leucine zipper, homeobox-associated
PfamPF021838.3E-11228262IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRNYKFLKQM GMDMEDCNTG LGLGMSIGLG MSLIREDLHS HRHHVNGPPV QLDLLPLAPV  60
LQHRDSPWGK SSPGTDGERS AGESKGTMPR RIDVNKLPAS CYYNEDAGTI NVSSPNSALS  120
SFHVDSGGAI NAESSCYAMS VKRERDANEE LEAERACSRV SDEEADQEGG TRKKLRLSKE  180
QSALLEESFK ENSSLNPKQK QALAKRLNLR PRQVEVWFQN RRARTKLKQT EVDCEFLKRC  240
CESLTDENRR LQKELQELRA LKLASPLYMQ MPAATLTMCP SCERVVPAEN SRPPPFTLAK  300
PQFYSYTHSS AAC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170176TRKKLRL
2220228RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF0818140.0EF081814.1 Picea sitchensis clone WS0294_F04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018857289.11e-91PREDICTED: homeobox-leucine zipper protein HAT22-like
SwissprotP466041e-73HAT22_ARATH; Homeobox-leucine zipper protein HAT22
SwissprotP466653e-73HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA9NKN40.0A9NKN4_PICSI; Uncharacterized protein
STRINGXP_010248307.11e-89(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.11e-75HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]