PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00022099-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 757aa    MW: 84532.9 Da    PI: 5.1833
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00022099-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.31.7e-15527573455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  A+eY+k+Lq
  PSME_00022099-RA 527 SHVLAERRRREKLNEKFIILRSLVPFV-----TKMDKASILGDAIEYLKQLQ 573
                       8999**********************8.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-4818194IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.688523572IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-19524590IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.79E-16526577No hitNo description
Gene3DG3DSA:4.10.280.101.7E-19527593IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-13527573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.7E-19529578IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    Send to blast
MCLKAMAVMA SANSSVIRKQ LESVVQSIQW TYSIFWQLSN QQGVLEWSDG YYNGDIKTRK  60
TVQPMELSNE ELCLQRTLQL RELYESLSAG ESNQPARRPC AALSPEDLTD TEWYYLVCMS  120
YTFAPGVGLP GRTLANGRLV WLCQANEADS KVFPRALLAK TVVCIPLGDG VLELGTTELE  180
REDPGLVQRT MSFFMEYPKP ICSEQSTSSP QCSDRDEKDQ VGMMTLMSSD NIVCSARNQI  240
GASSITDCGQ YLPTSNEDLD LPIQTFDQKD KILVTEYPQQ HGLINESMQV DICEDYKASG  300
SPEDHCCNGD PGPHEFPLIS AENDCLQNGH VNLNPAALES WPYMEDNTSH GLQASGECVT  360
QSIVDPSPQP VYNSHRDMNM SMNMDMNVLL GLEQGSNALE TMLESATQTL DEDGHYSRTL  420
STILEQQQAS NLTESTGFIS TKPGKDWRSR PSHQGSGFIR WKSNGNCVVG IKAVASPQRL  480
LKKVLFNLAR LHSKYKEDPA YSPKLGEEEI GCRLVGRKIG QEDLSVSHVL AERRRREKLN  540
EKFIILRSLV PFVTKMDKAS ILGDAIEYLK QLQRRVEELE ASSKLMEAEM KKTQDRNLLK  600
RSGTTKDMRM TRHEGNHVDS CLQSSCLDGE LSWTLRDTKQ PPSKMARVES KRKLNDLHNK  660
GSYTLAAAEA DLEVSVSVIE DDAVLIEIQC PCRHGVLLDI MQRLNCLHMD TYSVQSSTVD  720
KMFAAVLKAK VQEKFTGGKR PSIAEVKEAI ELVASKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-22131945192Transcription factor MYC3
4rqw_B1e-22131945192Transcription factor MYC3
4rs9_A1e-22131945192Transcription factor MYC3
4yz6_A1e-22131945192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1531536ERRRRE
2532537RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU1312270.0KU131227.1 Picea abies transcription factor bHLH-2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A167V9640.0A0A167V964_PICAB; Transcription factor bHLH-2
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.12e-69bHLH family protein