PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00022202-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

HSF

Protein Properties

Length: 219aa MW: 25538.1 Da PI: 7.7634

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00022202-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	89.7	3.7e-28	15	97	2	93
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 Fl+k+y++++d+++++++sws ++nsf+v++++ef +L++yFkhsnf+SFvR+Ln+YgF+k++ e+ weF+++ F + + ++ PSME_00022202-RA 15 FLTKTYDMVDDPATNTMVSWSPSSNSFIVWNPTEFFGVLLSTYFKHSNFSSFVRKLNTYGFHKIDPER---------WEFTNEGFLRVHSHS 97 9******************999***************************************999.........888888887665543 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	1.3E-33	6	96	IPR011991	Winged helix-turn-helix DNA-binding domain
SuperFamily	SSF46785	9.11E-28	10	94	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	9.9E-42	11	104	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	3.6E-25	15	97	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.4E-18	15	38	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.4E-18	53	65	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.4E-18	66	78	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 219 aa Download sequence Send to blast
MEGSQNDSSN GPPPFLTKTY DMVDDPATNT MVSWSPSSNS FIVWNPTEFF GVLLSTYFKH 60 SNFSSFVRKL NTYGFHKIDP ERWEFTNEGF LRVHSHSQQL QKGESLSRGA CVEIKQLEYE 120 TEKLRQEKQG LVIELVRLKQ HQQDTEFDLQ SLEEQLQVME QRQHRMMAFL AKANPNFVAQ 180 LVQHHDKIAH IATKTRKEDC KIMMRSWRLG KMDVLVAKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	3e-18	13	92	18	108	Heat shock factor protein 1
5d5u_B	3e-18	8	92	19	117	Heat shock factor protein 1
5d5v_B	3e-18	8	92	19	117	Heat shock factor protein 1
5d5v_D	3e-18	8	92	19	117	Heat shock factor protein 1
5hdg_A	2e-18	13	92	8	98	Heat shock factor protein 1
5hdn_A	2e-18	13	92	8	98	Heat shock factor protein 1
5hdn_B	2e-18	13	92	8	98	Heat shock factor protein 1
5hdn_C	2e-18	13	92	8	98	Heat shock factor protein 1
5hdn_D	2e-18	13	92	8	98	Heat shock factor protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not induced by heat stress. {ECO:0000269\|PubMed:18064488}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT117589	1e-137	BT117589.1 Picea glauca clone GQ03904_J01 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276853.1	1e-72	PREDICTED: heat shock factor protein HSF8
Refseq	XP_010276854.1	1e-72	PREDICTED: heat shock factor protein HSF8
Refseq	XP_010276855.1	1e-72	PREDICTED: heat shock factor protein HSF8
Refseq	XP_010276856.1	1e-72	PREDICTED: heat shock factor protein HSF8
Refseq	XP_010276857.1	1e-72	PREDICTED: heat shock factor protein HSF8
Refseq	XP_010276858.1	1e-72	PREDICTED: heat shock factor protein HSF8
Swissprot	Q84T61	4e-63	HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBL	A0A200PXG0	3e-72	A0A200PXG0_9MAGN; Heat shock factor (HSF)-type
STRING	XP_010276853.1	5e-72	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G17750.1	6e-64	heat shock factor 1

Publications ? help Back to Top
Chauhan H,Khurana N,Agarwal P,Khurana P Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress. Mol. Genet. Genomics, 2011. 286(2): p. 171-87 [PMID:21792744]