PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00022236-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 167aa MW: 18664.2 Da PI: 9.6559

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00022236-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24	6.8e-08	69	102	4	32
HHHHHHHHHHHHHHHHHHHHHCTSCCC....... CS HLH 4 ahnerErrRRdriNsafeeLrellPkas.....k 32 +h+ +Er RR++i ++++ L++l+P +s k PSME_00022236-RA 69 SHSLAERVRRQKITDRMNVLQSLIPGCSkvlsmK 102 8************************986455550 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.21E-4	63	97	No hit	No description
SuperFamily	SSF47459	6.54E-8	63	98	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.75	65	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-8	68	97	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.7E-5	69	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 167 aa Download sequence Send to blast
MDKPKRARCK SSPNSSASKD YEKNLNSKLD VIRRDPAELL CKTVKNEEKA ESEKDYIHVR 60 ARRGQATDSH SLAERVRRQK ITDRMNVLQS LIPGCSKVLS MKLGSINSLC AYDEPNADHQ 120 SQALLPLQAL PDPMIANGTA PSYVDHSYTV AQQQTPRTLI KESSTKL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	D5AB25	1e-31	D5AB25_PICSI; Uncharacterized protein
STRING	OB04G16610.1	3e-23	(Oryza brachyantha)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59640.1	4e-24	BIG PETAL P