PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00022243-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 212aa    MW: 24947.7 Da    PI: 6.1425
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00022243-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.29.5e-0655103355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +   +E+ RR+r++    +L +llP       +Kl+     e+A++YI +L+
  PSME_00022243-RA  55 GSQVVAEQLRRKRMKCLCTQLESLLPMT----TPKLDRCGLYEEAINYITKLE 103
                       566789*********************8....69***************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.5E-951116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.01452102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.81E-1053114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.66E-454107No hitNo description
SMARTSM003538.0E-458108IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MLIQCTPPSQ ADFQVIALRK RTFEVDLDSQ QELKDLQEIV WRDVDQMTIK DTTRGSQVVA  60
EQLRRKRMKC LCTQLESLLP MTTPKLDRCG LYEEAINYIT KLEEDLRQLK RKRDHLLAIQ  120
SGKTTNKNID LKVVVEIYDR EAIISITGQR RPRYLWKILE ELETHGLDVE NSQLFIGESF  180
LFLYFHVNFT DNVSHDPDQI RSSLECRLIL TY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LPL51e-96B8LPL5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.32e-06bHLH family protein