PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00022289-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 576aa    MW: 63420 Da    PI: 6.5992
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00022289-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.93.7e-08364409454
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                        h + ErrRR++++++fe Lr+  P+      +  +Ka+iL  + eY+ sL
  PSME_00022289-RA 364 HHMISERRRREKLKEGFEALRSFFPPG-----TMKDKASILGYTREYLTSL 409
                       68899********************96.....5789***********9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.0E-1312140IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000832.46E-9358414No hitNo description
PROSITE profilePS5088813.211360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.7E-10360408IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-14361431IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-5364409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-6366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1702.4E-5409429No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MDFICDLNCQ SLQEIMRGIV ISLGWDYIVL WSLDQQAQEL ACKNGWFNPV IATESSTEQS  60
VDGQTLFNLY KLGRFALDAG VPGLSLNQLP YVWLTANELL RFSSNESQEE FYKAAGIQTA  120
LFIPCGNGVV ELGSTNLVQA ADEQNILRIS SLMGSLMVLP NISVTTSMPG SSISTSSCSS  180
LLSRSILHSP ERSSMVSYLQ YPTITTSDQM ISNIVPQNTY QYSMSATELA SGFYPYLQTL  240
QLSPSSSQIF MSGHDQYNET TLAVYPGNSS HQINNVSNML LFPQSSQASG FPVAPFAKNM  300
MLSAFGIWKP PSKVQTPPVV LEGQYTLKRC LTIVRNIHEG RLGQVSMFGS YRQPGEKDSS  360
SQVHHMISER RRREKLKEGF EALRSFFPPG TMKDKASILG YTREYLTSLK SRVEVLEQRN  420
KQLESELNKF TRSRAQSEKG AGTSTALHQQ QAGSTSAEGC DCVVTVEASK RGGSGTGNAC  480
DEMEIEVVVD RPTNTIDSMI ALLKGLTEMR VPLISMATST AHPHPDNDPQ RLQFRMSATI  540
KLKDEELEGV KEGLVSALKK DGGPLPQQRA RSKVNC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325329TLKRC
2368373ERRRRE
3369374RRRREK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-18bHLH family protein