PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00022339-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 249aa MW: 27230.8 Da PI: 4.4676

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00022339-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	153.2	1.6e-47	104	204	1	101
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaa 93 ppp aflgpkcalwdc+rpaqgs w+q+ycs+fh ++ lneg+pg+ pvlrp+gidlkdgllf +l ak+ k+ gipecegaat+kspwna+ PSME_00022339-RA 104 PPPEAFLGPKCALWDCPRPAQGSYWCQHYCSNFHGMVVLNEGPPGMGPVLRPGGIDLKDGLLFVSLGAKTLVKSFGIPECEGAATKKSPWNAP 196 89******************************************************************************************* PP VOZ 94 elfdlsll 101 + l+ l PSME_00022339-RA 197 GMSSLTCL 204 99888754 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MLEASLCSSN LSCDMWRLLQ LHEEEDDATS ILAAPYSSKL QLNENTLEAA NPSSFQEAVP 60 PNEMRKDFYV DHANAEAQNI DGTNPEVEEE HIPKFQVPCP GISPPPEAFL GPKCALWDCP 120 RPAQGSYWCQ HYCSNFHGMV VLNEGPPGMG PVLRPGGIDL KDGLLFVSLG AKTLVKSFGI 180 PECEGAATKK SPWNAPGMSS LTCLFFKGKL LESGSFFTIH EGILRVETES NDHCQIIMVV 240 DGMNQESKS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006594297.1	5e-60	transcription factor VOZ1
Refseq	XP_020206162.1	5e-60	transcription factor VOZ1
Refseq	XP_020206163.1	5e-60	transcription factor VOZ1
Refseq	XP_028188938.1	7e-60	transcription factor VOZ1-like isoform X1
Refseq	XP_028188939.1	5e-60	transcription factor VOZ1-like isoform X2
Swissprot	Q9SGQ0	1e-54	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	A0A2P5QS07	1e-59	A0A2P5QS07_GOSBA; Uncharacterized protein
TrEMBL	A0A445I667	1e-58	A0A445I667_GLYSO; Transcription factor VOZ1 isoform A
TrEMBL	I1M050	1e-58	I1M050_SOYBN; Uncharacterized protein
STRING	GLYMA13G24170.1	2e-59	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	5e-57	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]