PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00022405-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

bHLH

Protein Properties

Length: 431aa MW: 47493 Da PI: 6.7931

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00022405-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37.3	5.1e-12	245	291	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h ++Er+RR+r+ ++f L l+P + kK++Ka++L A++Y+k+L PSME_00022405-RA 245 QDHIMAERKRRERLSQRFIALSALIPGL-----KKMDKASVLDDAIKYVKKL 291 5699**********************.....9**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.643	242	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-9	246	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	9.55E-17	246	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-16	246	303	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.76E-13	247	295	No hit	No description
SMART	SM00353	3.6E-13	248	297	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MSAMLQRTSL TNPKSQNMKM ETLSAQWLSS LGMEDPALLR QYSNLSTPTL EQLAASMDYQ 60 PNENFDQGGS FPSFDPMENL KIPSTACSEF HSGVRLSEGL TGYERPMKIQ RANNWDSTSS 120 QLPFSSVYLQ NSMQNVQVQQ QHCLPQQLES YITSLPQVKD DIYETVAPRT PAIQGEITVS 180 NGSVGQKSCI SHSDINHGLD AFNLSAGGEL MSTQNIFMGK HYLDANISTS ILNPPVPAKT 240 SGHSQDHIMA ERKRRERLSQ RFIALSALIP GLKKMDKASV LDDAIKYVKK LRERLNLLEQ 300 QIPKHTVQSV VYVNKSPLAS EDGKASSKES SMENSSKGNG DDKLGLLTPE IEARVVDKNV 360 LVRIHCEKKK GLLVKSLAEL EKLQLTVVNA SILSFSETAL DLTLSAQMEE GCGITGADIV 420 KNLEGLFKKM A

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MSAMLQRTSL TNPKSQNMKM ETLSAQWLSS LGMEDPALLR QYSNLSTPTL EQLAASMDYQ  60
PNENFDQGGS FPSFDPMENL KIPSTACSEF HSGVRLSEGL TGYERPMKIQ RANNWDSTSS  120
QLPFSSVYLQ NSMQNVQVQQ QHCLPQQLES YITSLPQVKD DIYETVAPRT PAIQGEITVS  180
NGSVGQKSCI SHSDINHGLD AFNLSAGGEL MSTQNIFMGK HYLDANISTS ILNPPVPAKT  240
SGHSQDHIMA ERKRRERLSQ RFIALSALIP GLKKMDKASV LDDAIKYVKK LRERLNLLEQ  300
QIPKHTVQSV VYVNKSPLAS EDGKASSKES SMENSSKGNG DDKLGLLTPE IEARVVDKNV  360
LVRIHCEKKK GLLVKSLAEL EKLQLTVVNA SILSFSETAL DLTLSAQMEE GCGITGADIV  420
KNLEGLFKKM A

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	250	255	ERKRRE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	1e-46	bHLH family protein