PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00022409-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family LBD
Protein Properties Length: 169aa    MW: 19010.6 Da    PI: 6.5033
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00022409-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.31.9e-41101091100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       aCaaCk++r+kC+++Cvlapy+p+++p+kf  +h+lFG+ +v+kll++lp e+r da+sslvyeA+ar+ dPv+G++gvi++lq++le+++++
  PSME_00022409-RA  10 ACAACKFHRKKCSEKCVLAPYLPHNDPNKFLLLHRLFGTGHVVKLLQELPAEQRGDAVSSLVYEAKARVADPVHGCAGVINNLQKKLEEVQSQ 102
                       7******************************************************************************************** PP

            DUF260  94 lallkee 100
                       la++k++
  PSME_00022409-RA 103 LASAKAK 109
                       **99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.8789110IPR004883Lateral organ boundaries, LOB
PfamPF031952.9E-3910107IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MSKVSREETA CAACKFHRKK CSEKCVLAPY LPHNDPNKFL LLHRLFGTGH VVKLLQELPA  60
EQRGDAVSSL VYEAKARVAD PVHGCAGVIN NLQKKLEEVQ SQLASAKAKL DNMSAQQSNF  120
IINLINSWDH QGNWDPNFES TLLQENQERQ SINPTVLDVE VDSLPLWDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-341111012111LOB family transfactor Ramosa2.1
5ly0_B8e-341111012111LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LQI95e-52B8LQI9_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-48LOB domain-containing protein 1