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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | PSME_00022623-RA | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
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| Family | bHLH | ||||||||
| Protein Properties | Length: 105aa MW: 12308.6 Da PI: 5.0893 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 38.8 | 1.7e-12 | 63 | 104 | 1 | 44 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiL 44
+++ hn++Er+RR++++ ++eLr+llP++ ++++Kls +++
PSME_00022623-RA 63 KKAVHNAMERQRRNKLKVLYSELRSLLPNP--NTKRKLSIPDTV 104
6889*************************6..49999*988775 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 3.05E-10 | 60 | 101 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 12.532 | 62 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.7E-9 | 63 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.06E-9 | 63 | 99 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 1.1E-8 | 63 | 99 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 105 aa Download sequence Send to blast |
MSNQFDQQQP ADSNNTVMEY ISQFGMHDNN YQYANQLLPM DLDQLQQPNY DEESVPNSED 60 YTKKAVHNAM ERQRRNKLKV LYSELRSLLP NPNTKRKLSI PDTVS |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G04150.1 | 7e-11 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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