PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00022766-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C2H2
Protein Properties Length: 374aa    MW: 41742.7 Da    PI: 7.0779
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00022766-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05211230120
                       EEETTTTEEESSHHHHHHHH CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                       ++C  C+k+F+r  n++ H+
  PSME_00022766-RA 211 FSCAVCNKTFNRYNNMQMHM 230
                       89*****************9 PP
2zf-C2H2120.00062295317123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       + C +C+k F  + + ++H +++
  PSME_00022766-RA 295 FACRKCSKAFAVRGDWRTHEKNC 317
                       78*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.34E-5206232No hitNo description
SMARTSM003550.34211233IPR015880Zinc finger, C2H2-like
PfamPF128741.4E-4211230No hitNo description
Gene3DG3DSA:3.30.160.602.1E-5211230IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.221211238IPR007087Zinc finger, C2H2
PROSITE patternPS000280213233IPR007087Zinc finger, C2H2
PROSITE profilePS508688.086253269IPR003616Post-SET domain
SuperFamilySSF576676.24E-6276315No hitNo description
Gene3DG3DSA:3.30.160.605.3E-5282315IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035578295315IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MYLEEEESNS RSRAAKNCEE MSSWRSMDLR SHRSYVAVPL HGLPFSHEWA TNPLVSHLPA  60
GFPFPYDHGA AVSSPTYVAQ ADSSSSIFMP SLRSIRQLPY AHPISSNDIK PSPPPQNIAD  120
DYDEEEEPIL SLRPPGQTDL ALKKSNAQAP EEQSGDNVTV ALHIGPPTSV PLDCDSVSSV  180
NDGCFQANER LAMGQYWIPT PSQILVGPTQ FSCAVCNKTF NRYNNMQMHM WGHGSQYRKG  240
PDSLRGTKPS AIMRLPCYCC APGCRNSIDH PRSKPLKDFR TLQTHYKRKH GIKPFACRKC  300
SKAFAVRGDW RTHEKNCGKL WFCTCGSDFK HKRSLKDHIR AFGQGHAPHG VESCEDDDEP  360
ASEELDDVYS GTSE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024396645.11e-130zinc finger protein WIP6-like
SwissprotQ9SVY11e-111ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2K1JDJ61e-128A0A2K1JDJ6_PHYPA; Uncharacterized protein
STRINGPP1S359_44V6.11e-130(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-114C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]