PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00022781-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

MYB_related

Protein Properties

Length: 1068aa MW: 121459 Da PI: 6.135

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00022781-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.5	7.2e-14	272	320	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqky 47 r+rWT eE+e l +a++++G+g+Wk I ++ + +R+ q+k+++++ PSME_00022781-RA 272 RKRWTVEEEEALRRAIHRFGPGNWKEIKEHEPvfRNRSTVQIKDKYRQM 320 89********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00085	0.0028	123	161	No hit	No description
PROSITE profile	PS51294	13.393	269	325	IPR017930	Myb domain
SMART	SM00717	3.9E-12	271	323	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.52E-12	272	322	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-12	272	320	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-12	272	320	IPR001005	SANT/Myb domain
CDD	cd11660	4.74E-17	273	321	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1068 aa Download sequence Send to blast
RTMFAKQVLT DEERRVDPEL GYPRGYAKLC RNAHIQMRGL ITPYTEGPPQ RFLPYMLQPE 60 DMVKMKEFNE LFPIAESEER DPSSARRYAD SLWKQLDHLG NAGFDPAKFR IDPYGNVLYI 120 NADPASPLAW EVDHWFPHSR GGKTVPSNLR LVQWQVNQRK QNKLEFLVPW WDLQLGVSVN 180 QFLSIFASKN SDFRQRAFSL FFFAGENEPL NEVLVADSHS WPSSFRERKS QFGLAPAAIV 240 TVQKQADESL KHLNGNRPIN SAWPIPSGTP SRKRWTVEEE EALRRAIHRF GPGNWKEIKE 300 HEPVFRNRST VQIKDKYRQM KGDWELEKEN RADDLSDKEL ILSRTVQKEN RLKKIREQEI 360 QAKEEEIVQL DKDLKDLQEQ NEAERMALED LESILIKHRR RVEKQRRWSE TQSSYRMCLE 420 KMIRDAMHQS IVYKEQGRLN QAACNALMAR LETQKATCDA SEMELIKKIK QREDLELLLR 480 PCMEHAKKSL HDDTSSCSKQ NIKMELEELP TCHPPDTGCA HFANVAAADV KEEPDTVLKH 540 KESFSPLLVT KEEYSTSLQK ELKLFPKEEK AESKANMCLI APKEQCRAEM EMVQNEPALS 600 VANMGKKVAV TEKSRLSEAE ESDLDVLIVG YEYEGAIARA REAESVGENL TTGTLSDFKQ 660 TKFEGWAKED CASMVGENNG LGKQSRVAKE DRDCKPLEDD QLDKMFGDEL AMQGQAEAVM 720 ADAITGGENN DEDERIKTAG QSNLDKRLQL PLLNPQAGED TEPKNNILTA THDDFTTTHV 780 DESNKLGSRS PHHKKIPSFG GSDEKTDVRH RNARHATESV LTMEANSLEL VEKFHSLHLA 840 CNDEGHVKMQ TKVDGIPKTL NTDTEVSKKR NELAIKENPC KEMENENQAM TTPVAVGNVD 900 EMFEPGLKKI LHPQEEINNF GQVKVQQTVG GIRTKGDSYY MPELKEPERS IKCLQQKEKE 960 CRLQRSESAR VCPNANNATA SFWGVRRSGE ESKGSDMVFG KVVHSGENGE LEEAKRAEDE 1020 DGHSHGHQGV MLLKNGLNAS IKTCTHVWRK AIKRLEGAAI GTDHNSNV

Sequence ? help Back to Top

Protein Sequence Length: 1068 aa Download sequence Send to blast

RTMFAKQVLT DEERRVDPEL GYPRGYAKLC RNAHIQMRGL ITPYTEGPPQ RFLPYMLQPE  60
DMVKMKEFNE LFPIAESEER DPSSARRYAD SLWKQLDHLG NAGFDPAKFR IDPYGNVLYI  120
NADPASPLAW EVDHWFPHSR GGKTVPSNLR LVQWQVNQRK QNKLEFLVPW WDLQLGVSVN  180
QFLSIFASKN SDFRQRAFSL FFFAGENEPL NEVLVADSHS WPSSFRERKS QFGLAPAAIV  240
TVQKQADESL KHLNGNRPIN SAWPIPSGTP SRKRWTVEEE EALRRAIHRF GPGNWKEIKE  300
HEPVFRNRST VQIKDKYRQM KGDWELEKEN RADDLSDKEL ILSRTVQKEN RLKKIREQEI  360
QAKEEEIVQL DKDLKDLQEQ NEAERMALED LESILIKHRR RVEKQRRWSE TQSSYRMCLE  420
KMIRDAMHQS IVYKEQGRLN QAACNALMAR LETQKATCDA SEMELIKKIK QREDLELLLR  480
PCMEHAKKSL HDDTSSCSKQ NIKMELEELP TCHPPDTGCA HFANVAAADV KEEPDTVLKH  540
KESFSPLLVT KEEYSTSLQK ELKLFPKEEK AESKANMCLI APKEQCRAEM EMVQNEPALS  600
VANMGKKVAV TEKSRLSEAE ESDLDVLIVG YEYEGAIARA REAESVGENL TTGTLSDFKQ  660
TKFEGWAKED CASMVGENNG LGKQSRVAKE DRDCKPLEDD QLDKMFGDEL AMQGQAEAVM  720
ADAITGGENN DEDERIKTAG QSNLDKRLQL PLLNPQAGED TEPKNNILTA THDDFTTTHV  780
DESNKLGSRS PHHKKIPSFG GSDEKTDVRH RNARHATESV LTMEANSLEL VEKFHSLHLA  840
CNDEGHVKMQ TKVDGIPKTL NTDTEVSKKR NELAIKENPC KEMENENQAM TTPVAVGNVD  900
EMFEPGLKKI LHPQEEINNF GQVKVQQTVG GIRTKGDSYY MPELKEPERS IKCLQQKEKE  960
CRLQRSESAR VCPNANNATA SFWGVRRSGE ESKGSDMVFG KVVHSGENGE LEEAKRAEDE  1020
DGHSHGHQGV MLLKNGLNAS IKTCTHVWRK AIKRLEGAAI GTDHNSNV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT106266	0.0	BT106266.1 Picea glauca clone GQ02906_D15 mRNA sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11510.2	6e-07	myb domain protein 3r-4