PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00022805-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family bHLH
Protein Properties Length: 233aa    MW: 25873.9 Da    PI: 5.0412
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00022805-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.10.000351291513355
                       .TTS-STCHHHHHHHHHHHHHHH CS
               HLH  33 apskKlsKaeiLekAveYIksLq 55 
                       a+ +K++Ka+i    + YI+sLq
  PSME_00022805-RA 129 ASPPKMDKASIIVDSIAYIQSLQ 151
                       56689*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.108.7E-6132164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MCVLDDFDDA LFSASLGFPC VERSGSTIKM DSMLDPEDGC PFESHQCSSE PSCSWTSLPE  60
GYLHHFSPEE NFIPAADHDS CSFFKNVQNP SSIREAREPA NAKCKMALKD IARSSKRKCS  120
SRFAEESHAS PPKMDKASII VDSIAYIQSL QKKIKEAEAD VSAYQATTIQ YSSSSISSRI  180
ESTEVGNDEK TPTKSQVHQG FKILEVKEKE LMQENQIRRI VVEAAANYGF HEA