PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00022813-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 220aa    MW: 24758.4 Da    PI: 6.9696
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00022813-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY27.18.6e-09201220221
                       --SS-EEEEEEE--TT-SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefp 21 
                        Dgy+W KYGqK+vkg+++p
  PSME_00022813-RA 201 YDGYSWHKYGQKVVKGNHHP 220
                       5****************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.9E-10185220IPR003657WRKY domain
SuperFamilySSF1182902.75E-7193220IPR003657WRKY domain
PROSITE profilePS5081112.232195220IPR003657WRKY domain
PfamPF031065.3E-5202220IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
GESQDSDLLL AIFLQLSFPR NDFTQRGSFS DLLIARLNGL LNIQGFPGNH RQPKWAFTTG  60
QSRSHNRPLG LFNSRPQRAL LQANQALSIG QSGSHNRPLG LFNNRPQRAL LQANQALSID  120
PSTSAREHDV GQRSVEQSCG SSDDVEDDYK FSRIDSADDD DKELDAKRRK EENIKEIVSL  180
NRTIKEPHVV VETISDVDIL YDGYSWHKYG QKVVKGNHHP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLE6Y3E92e-30E6Y3E9_PINMO; WRKY transcription factor PmWRKY117 (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.16e-14WRKY DNA-binding protein 2