PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00022920-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

VOZ

Protein Properties

Length: 373aa MW: 42045.4 Da PI: 5.4634

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00022920-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	375.4	1.7e-115	65	274	2	217
VOZ 2 ppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaae 94 aflgpkcalwdc+rpaqg++w+qdy s fh +la neg+pg++pvlrp+gidlkdg+lfaalsak+q k vgi ecegaatakspwna e PSME_00022920-RA 65 VFNAFLGPKCALWDCSRPAQGTKWCQDYYSDFHMSLASNEGAPGMRPVLRPGGIDLKDGPLFAALSAKTQEKAVGISECEGAATAKSPWNAYE 157 5679*************************************************************************************** PP VOZ 95 lfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlel 187 lfd+ +lege++rewlffdkp gnrkqrs+pdysgrgwhesrkqv+k+fgglkrsyymdpqps++fewhlyeyein++da+alyrlel PSME_00022920-RA 158 LFDMYVLEGESMREWLFFDKP------GNRKQRSFPDYSGRGWHESRKQVIKDFGGLKRSYYMDPQPSTQFEWHLYEYEINDCDACALYRLEL 244 ****************9......9************************************************************* PP VOZ 188 klvdekksakgkvskdsladlqkklgrlta 217 k+v +kk++kgkv d+l+dlq++lg+l+a PSME_00022920-RA 245 KMVCSKKNTKGKVGGDPLVDLQHQLGKLSA 274 **************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
QLPPNIEHQE NNNYVQTSEQ LPPNLVEGLE VTSGLEGGQI NFHQDYIPTA QPIFTLTGEE 60 EKSPVFNAFL GPKCALWDCS RPAQGTKWCQ DYYSDFHMSL ASNEGAPGMR PVLRPGGIDL 120 KDGPLFAALS AKTQEKAVGI SECEGAATAK SPWNAYELFD MYVLEGESMR EWLFFDKPGN 180 RKQRSFPDYS GRGWHESRKQ VIKDFGGLKR SYYMDPQPST QFEWHLYEYE INDCDACALY 240 RLELKMVCSK KNTKGKVGGD PLVDLQHQLG KLSAEFSWNG SNYTYSSSTQ VSPIGKNLLM 300 GHECSMVILS KKQVDAMQLN DKRALTKYST LYNYSVYFKE MIDALPTINN AIIKGIMESD 360 ANAFAPFQQA SRY

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

QLPPNIEHQE NNNYVQTSEQ LPPNLVEGLE VTSGLEGGQI NFHQDYIPTA QPIFTLTGEE  60
EKSPVFNAFL GPKCALWDCS RPAQGTKWCQ DYYSDFHMSL ASNEGAPGMR PVLRPGGIDL  120
KDGPLFAALS AKTQEKAVGI SECEGAATAK SPWNAYELFD MYVLEGESMR EWLFFDKPGN  180
RKQRSFPDYS GRGWHESRKQ VIKDFGGLKR SYYMDPQPST QFEWHLYEYE INDCDACALY  240
RLELKMVCSK KNTKGKVGGD PLVDLQHQLG KLSAEFSWNG SNYTYSSSTQ VSPIGKNLLM  300
GHECSMVILS KKQVDAMQLN DKRALTKYST LYNYSVYFKE MIDALPTINN AIIKGIMESD  360
ANAFAPFQQA SRY

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011626288.1	1e-123	transcription factor VOZ1
Refseq	XP_011626289.1	1e-123	transcription factor VOZ1
Swissprot	Q9SGQ0	1e-112	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	W1Q0P1	1e-121	W1Q0P1_AMBTC; Uncharacterized protein
STRING	ERN14021	1e-122	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	1e-114	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]