PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00022946-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family ERF
Protein Properties Length: 468aa    MW: 53362.2 Da    PI: 6.6698
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00022946-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.41.1e-20142191255
               AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a+++a++k++g
  PSME_00022946-RA 142 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEDAARAYDEAALKFRG 191
                       8********.**********94....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.66E-36141200No hitNo description
PROSITE profilePS5103225.739142199IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.1E-33142200IPR001471AP2/ERF domain
PfamPF008475.8E-14142191IPR001471AP2/ERF domain
SMARTSM003802.9E-38142205IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22142200IPR016177DNA-binding domain
PRINTSPR003671.1E-11143154IPR001471AP2/ERF domain
PRINTSPR003671.1E-11165181IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MESGNEPWPP AEELHLFDPG SSLAGIANEE NERFRVHRSK DPYFCYLRVV GGRTINPMET  60
KTDLLVAGQK RRRDEQQMIT IPTNCFKEED ITCQHFAVSS SQEIPSIVMP HQHQQRISGE  120
DGMSWKRMDE LPQPQNPPKK KRYRGVRQRP WGKWAAEIRD PKKAARVWLG TFETAEDAAR  180
AYDEAALKFR GSRAKLNFPE RIDIQDEDHL GVNIVKNEIA PLTDSSVQVR PATSTTFPLT  240
HYNNLSAPTI GCRSACVERM SCAAFFDPQH QYHENPSQQF MRTDSTCLSQ FSDAYLYSQL  300
QHNPGFTCLS QFSDPYDHCA QLLHNPGFAV EQANSHPNLL QQYLAAYTRS QQQPESYNHQ  360
LPSIMPIQNQ PSLDYNQQLQ ITRRSNLASS TYTGTRPYIF NNYVQQQQPY MLNQQQRASS  420
IGTTGYGELY SLRGRIIDQI SGDPLASAQS QHEFSDNSDY NFSSSSCT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-27139203267ATERF1
3gcc_A2e-27139203267ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9P2881e-125A9P288_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.16e-28ERF family protein