PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023105-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family VOZ
Protein Properties Length: 302aa    MW: 34663.9 Da    PI: 8.5585
Description VOZ family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023105-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1VOZ114.79.8e-36240301104165
               VOZ 104 etirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssf 165
                         + ewlffdkprrafesgn+kqrslp y+g gwhesrkqvmk++gg krsyymdpqps++f
  PSME_00023105-RA 240 GKLLEWLFFDKPRRAFESGNKKQRSLPYYNGCGWHESRKQVMKKLGGIKRSYYMDPQPSNQF 301
                       4578*******************************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MMGKRSKNMS KSTTHQLIRV DYLQLMFTDL QQARKESQVN DALALSLCSS DLSCDMWRLL  60
QLHEEDDDAI SVLAAPYSSK LQLNKNTLES SNRSSFQEVI PPNEMRKDFY MDHANAQAQT  120
IDGTTTQMNQ DFDHNLCLSL DPKVEEEHIP KFQGPCLGIS PSLEAFLGPK CALWDCPSPA  180
HQTTAKTIVA IFMELMAFSL LSLVLKLWEK LLGFLNVKVS QQRNHPRMHL SSLTCLFFKG  240
KLLEWLFFDK PRRAFESGNK KQRSLPYYNG CGWHESRKQV MKKLGGIKRS YYMDPQPSNQ  300
FK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1153892e-93BT115389.1 Picea glauca clone GQ03615_G11 mRNA sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42400.12e-30vascular plant one zinc finger protein 2