PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023176-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 458aa    MW: 50766.7 Da    PI: 6.1455
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023176-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.74.1e-08321826
                      GGGGTS--TTTTT-SS-SS CS
           zf-CCCH  8 ffartGtCkyGdrCkFaHg 26
                      +f +tGtCkyG+ Ck++H+
  PSME_00023176-RA  3 HFIKTGTCKYGAVCKYHHP 21
                      799***************8 PP
2zf-CCCH20.49.3e-074166227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                      ++++C++++ tG CkyG++ kF+H++
  PSME_00023176-RA 41 GEKECPYYMCTGSCKYGATWKFHHSE 66
                      6789********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.883123IPR000571Zinc finger, CCCH-type
SMARTSM003562.9122IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-4421IPR000571Zinc finger, CCCH-type
SMARTSM003560.733966IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.0943967IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-44166IPR000571Zinc finger, CCCH-type
PfamPF003422.7E-10234269IPR001672Phosphoglucose isomerase (PGI)
SuperFamilySSF536971.04E-9234276No hitNo description
Gene3DG3DSA:3.40.50.104901.2E-9235266No hitNo description
SuperFamilySSF495032.75E-10263310IPR008972Cupredoxin
PfamPF077318.1E-12264311IPR011706Multicopper oxidase, type 2
Gene3DG3DSA:2.60.40.4207.0E-12267310IPR008972Cupredoxin
PROSITE profilePS5137510.337316350IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007564.3E-8322352IPR002885Pentatricopeptide repeat
PfamPF015351.2E-4322348IPR002885Pentatricopeptide repeat
PfamPF130418.8E-14351399IPR002885Pentatricopeptide repeat
PROSITE profilePS5137512.123351385IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007566.8E-9354386IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.635386420IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007567.6E-4389421IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.152421451IPR002885Pentatricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006094Biological Processgluconeogenesis
GO:0006096Biological Processglycolytic process
GO:0055114Biological Processoxidation-reduction process
GO:0004347Molecular Functionglucose-6-phosphate isomerase activity
GO:0005507Molecular Functioncopper ion binding
GO:0016491Molecular Functionoxidoreductase activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MTHFIKTGTC KYGAVCKYHH PSDRDGSRVQ LNYIGLPMRQ GEKECPYYMC TGSCKYGATW  60
KFHHSEPTAL LPDSGSPVYA MAELSLSPTS GSPYPAGLAS WSLQKAPYVS GPQLQGPSTY  120
IPVIHSHQQS TPSVQPGWST YHTILPVSFR HLILPEKYPP PTELLDLQPL PVSALRNPSY  180
EALYQQFRHF NPIQTQVFTV LYNSDDNVLV AALSVLSLLY LDCIKKAQTV LAWGVSIDGI  240
PLNFEAGEID FGEPGTNGQH SFYELIHQGH GNYDSTEDPS KFNLEDPPER NTVAVPAGGW  300
AAIRFKADNP DSRNITLPKV DAVIDGYCKK QNTAEAMKVF NEIMQRGCRP NISTYNILMN  360
GLVNEGRVGE GVKLRDSMLN KGCAPDLRTF NLLIGGLCKE GDRQGVDLLL LHLVEDGLVP  420
NNFTFMVFFD KLYREGKLQT GVSELDELLS EFCLNAVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jcr_C2e-2810021212371350hBrr2
5o9z_C2e-2810021212371350U5 small nuclear ribonucleoprotein 200 kDa helicase
5xjc_D2e-2810021212371350U5 small nuclear ribonucleoprotein 200 kDa helicase
5yzg_D2e-2810021212371350U5 small nuclear ribonucleoprotein 200 kDa helicase
5z56_D2e-2810021212371350U5 small nuclear ribonucleoprotein 200 kDa helicase
5z57_D2e-2810021212371350U5 small nuclear ribonucleoprotein 200 kDa helicase
5z58_D2e-2810021212371350U5 small nuclear ribonucleoprotein 200 kDa helicase
6ah0_D2e-2810021212371350U5 small nuclear ribonucleoprotein 200 kDa helicase
6ahd_D2e-2810021212371350Brr2, U5 small nuclear ribonucleoprotein 200 kDa helicase
6ff7_r2e-2810021212371350U5 small nuclear ribonucleoprotein 200 kDa helicase
6icz_D2e-2810021212371350U5 small nuclear ribonucleoprotein 200 kDa helicase
6qw6_5B2e-2810021212371350U5 small nuclear ribonucleoprotein 200 kDa helicase
6qx9_5B2e-2810021212371350U5 small nuclear ribonucleoprotein 200 kDa helicase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6771211e-150EF677121.1 Picea sitchensis clone WS02762_D09 unknown mRNA.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32930.23e-29zinc finger nuclease 2