PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023293-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 240aa    MW: 26628.1 Da    PI: 9.2423
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023293-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH30.75.4e-1082105427
                       ---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                         C++++rtG+C yG +C+++H+p
  PSME_00023293-RA  82 IDCSHYMRTGFCGYGMNCRYNHPP 105
                       58********************97 PP
2zf-CCCH35.91.3e-11129154227
                       -S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                       ++++C ++ rtG+CkyG++Ck+ H++
  PSME_00023293-RA 129 GEKECTYYIRTGFCKYGASCKYDHPQ 154
                       6789********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.85478106IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-578105IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-782105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-683106IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-484104IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.324128155IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-8129154IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-4129154IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6130155IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5133152IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MIDGIYRATV PQQRPASGVL RGRRVSDGRA DNWLPYYAGP NSAKSAAESI KESTWRMPLQ  60
LQDPRSRMNG YSESYPERPG QIDCSHYMRT GFCGYGMNCR YNHPPNMKQQ AARNKGELPE  120
RVGHNACQGE KECTYYIRTG FCKYGASCKY DHPQPAALGP LVPVSGSPLY ATVRPPIAPA  180
SATQYSPGLP TWPSHRTPYR QSPHMPGALS YMPVMYSPHQ GMLTASVSTP DLPRTDLNDV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6770771e-124EF677077.1 Picea sitchensis clone WS02761_F21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LMQ01e-129B8LMQ0_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.26e-27C3H family protein