PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023294-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family C3H
Protein Properties Length: 240aa    MW: 25715.6 Da    PI: 7.4135
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023294-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.3e-0980106127
                       --S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                       +++++C+++ +tG Ck+G  Ck++H++
  PSME_00023294-RA  80 PGQPECQYYIKTGDCKFGFACKYHHPR 106
                       5789*********************96 PP
2zf-CCCH29.71.1e-09128152327
                       S---SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                       ++ C +++ +G+Ck+G++CkF H++
  PSME_00023294-RA 128 QPTCTYYSHYGICKFGPTCKFDHPM 152
                       689********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.01479106IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.30579107IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-581106IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-583108IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5123151IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-4125152IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.117125153IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-7128152IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
CNVLSDASQG PVSPITSPES QQQLRRMNII YNSTQPNGLS VGGLQGLTTP FGQGSSAAVG  60
HRPGHFQPNR TETETYPERP GQPECQYYIK TGDCKFGFAC KYHHPRERVS QSSTCVLSPI  120
GLPLRPTQPT CTYYSHYGIC KFGPTCKFDH PMTGLSYSPS ASSLSEIPVA PYPRASSPAA  180
THVVSPEPPQ EIAKSGDQLL KEPSSLKQDS DTVVSGNIRE SASTYSDGAI SSGSAQNMLC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6770770.0EF677077.1 Picea sitchensis clone WS02761_F21 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024373414.19e-49zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373415.19e-49zinc finger CCCH domain-containing protein ZFN-like isoform X1
RefseqXP_024373416.19e-49zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ84W914e-44C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLB8LMQ01e-132B8LMQ0_PICSI; Uncharacterized protein
STRINGPP1S102_155V6.16e-48(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.24e-41C3H family protein