PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PSME_00023520-RA

Organism

Pseudotsuga menziesii

Taxonomic ID

3357

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga

Family

WRKY

Protein Properties

Length: 246aa MW: 27782.6 Da PI: 8.6555

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PSME_00023520-RA	genome	PRS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.4	3.9e-30	142	200	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYG K k+ ++prsYYrC+ ++C+vkkkver+a+dp ++ +tYeg+Hnhe PSME_00023520-RA 142 VEDGYKWRKYGTKLLKNRPHPRSYYRCSESNCNVKKKVEREASDPGLLLTTYEGTHNHE 200 58********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	7.3E-31	128	201	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-26	135	201	IPR003657	WRKY domain
PROSITE profile	PS50811	27.692	137	202	IPR003657	WRKY domain
SMART	SM00774	7.0E-32	142	201	IPR003657	WRKY domain
Pfam	PF03106	1.4E-24	143	200	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MENLKNPDNF YRSLDSNPQY VDRSLDPINS LFCYTPIAAN HNNAIVSQEL PHIYPQDVPE 60 PKIWKDAAWI HDIVRIPSKE VDAVEATACK GPAPQSFPSL EEQPYGKGEI INGESSKKRK 120 KIRKAEKEPI CIFKTSSETN MVEDGYKWRK YGTKLLKNRP HPRSYYRCSE SNCNVKKKVE 180 REASDPGLLL TTYEGTHNHE SHSVIYYIRS PIILPQPPGL KPAIVLVNVG GVSSEAGIKF 240 ATQQAF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	6e-24	133	200	8	75	Probable WRKY transcription factor 4
2lex_A	6e-24	133	200	8	75	Probable WRKY transcription factor 4
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	116	120	KKRKK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A0D6RB88	5e-46	A0A0D6RB88_ARACU; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26170.1	1e-28	WRKY DNA-binding protein 50