PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00023521-RA
Organism
Pseudotsuga menziesii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family WRKY
Protein Properties Length: 234aa    MW: 26274.7 Da    PI: 6.7799
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00023521-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.23.9e-29130188159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ++Dgy+WrKYG    k+ ++prsYYrC+ ++C+vkkkver+a+dp ++ +tYeg+Hnhe
  PSME_00023521-RA 130 VEDGYKWRKYGTQLLKNRPHPRSYYRCSESNCNVKKKVEREASDPGLLLTTYEGTHNHE 188
                       58********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.7E-30116189IPR003657WRKY domain
SuperFamilySSF1182907.32E-26123189IPR003657WRKY domain
PROSITE profilePS5081127.232125190IPR003657WRKY domain
SMARTSM007741.1E-28130189IPR003657WRKY domain
PfamPF031069.5E-24131188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MENLKTPDNF YRSLDSNPQY VDRSLDPINS LFCYTPIAAN PNNAIVSQEL PHIYPQDVPE  60
PKIWKDAAWI HDIVRIPSKE VDAVEATACK GPAPQSFPSL EEQPYGKGEI IKAEKEPICI  120
FKTSSETNMV EDGYKWRKYG TQLLKNRPHP RSYYRCSESN CNVKKKVERE ASDPGLLLTT  180
YEGTHNHESH SVIYYIRSPI ILPQPPGLKP AIVLVNAGGV SSDAGIKFAT QQAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-23121188875Probable WRKY transcription factor 4
2lex_A2e-23121188875Probable WRKY transcription factor 4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.11e-28WRKY DNA-binding protein 28